View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14158_low_11 (Length: 258)
Name: NF14158_low_11
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 28707410 - 28707592
Alignment:
| Q |
67 |
ccaagtgtaacttggattatatccatgagttgcatctaggaagatcgttcttggaaattattgccttttcaagcagcaaccgagcaaaaacttccttcat |
166 |
Q |
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| T |
28707410 |
ccaagtgtaacttggattatatccatgagttgcatttaggaagatcgttcttggaaattattgccttttcaagcaactaccgagcaaaaactttcttcat |
28707509 |
T |
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| Q |
167 |
tccgaataatatgccattttttctttgctaacatagctaagttaaactccttcatggttctaaatcccattccacctccattt |
249 |
Q |
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| T |
28707510 |
tccgaataatatgccattttttctttgctaacatagctaagttaaactccttcatggttctaaatcccattccgccttcattt |
28707592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28707281 - 28707333
Alignment:
| Q |
18 |
aaggggaccaaattctatgaccttgttgatatggtaaccaattatcaccccaa |
70 |
Q |
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| T |
28707281 |
aaggggaccaaattctatgaccttgttgatatggtaaccaattatcaccccaa |
28707333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 24704436 - 24704622
Alignment:
| Q |
67 |
ccaagtgtaacttggattatatccatgagttgcatctaggaagatcgttcttggaaattattgccttttcaagcagcaaccgagcaaaaacttccttcat |
166 |
Q |
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| T |
24704436 |
ccaagtgtaacttggattatatccaagagttgcattgaggaagttggttcttggaaagtatcgccttttcaagcaactaccga--acaaactttcttcat |
24704533 |
T |
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| Q |
167 |
tccgaataatatgccattttttctttgctaacatagctaagtt-aaactccttcatggttctaaatcccattccacctccatttctctc |
254 |
Q |
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| T |
24704534 |
tctgaataatacgccatccttgccttgccaacatagctaagttaaaactccttcatggttttgaatcccgtcccaccttcatttttctc |
24704622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 24704308 - 24704355
Alignment:
| Q |
23 |
gaccaaattctatgaccttgttgatatggtaaccaattatcaccccaa |
70 |
Q |
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| T |
24704308 |
gaccaaattctacgaccttgctgatatggtaaccagttatcaccccaa |
24704355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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