View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14158_low_13 (Length: 240)

Name: NF14158_low_13
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14158_low_13
NF14158_low_13
[»] chr6 (1 HSPs)
chr6 (1-222)||(17871656-17871877)
[»] chr8 (1 HSPs)
chr8 (2-99)||(35837817-35837914)
[»] chr3 (2 HSPs)
chr3 (23-99)||(10349689-10349765)
chr3 (64-95)||(17051812-17051843)
[»] chr5 (2 HSPs)
chr5 (20-95)||(15392491-15392566)
chr5 (16-82)||(27324488-27324554)
[»] chr1 (1 HSPs)
chr1 (2-93)||(25388454-25388545)
[»] scaffold0092 (1 HSPs)
scaffold0092 (119-219)||(5205-5306)
[»] chr2 (1 HSPs)
chr2 (113-145)||(27864151-27864183)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17871656 - 17871877
Alignment:
Q  1 atatggaatgaacacaacaatagattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattattctttttggtggcttaaat 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||     
T  17871656 atatggaatgaacgcagcaatagattatttaaaaatatagaaaattgcatacctaagttattagataaagtaaagtattattctttttggtggcttaaac 17871755  T
Q  101 ccgatggtgttaattttgtttatggctttcagcggtggcggtcgaacgtgttcatgtgtttgggtattggctaatcacttaatgtaacattggtgacaac 200  Q
    || |||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  17871756 ccaatggggctaattttgtttatggctttcagcggtggcggtcgaacgtgttcatgtgcttgggtattggctaatcacttaatgtaacattgatgacaac 17871855  T
Q  201 ttgtaattattatgggtctcgt 222  Q
    |||||||||||||||| |||||    
T  17871856 ttgtaattattatgggcctcgt 17871877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 35837817 - 35837914
Alignment:
Q  2 tatggaatgaacacaacaatagattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattattctttttggtggcttaaa 99  Q
    |||||||||||| ||| ||||||||||| ||||||||| |||||| ||||||| | ||| | |||||| |||| |||||| |||||| ||||||||||    
T  35837817 tatggaatgaacgcaataatagattattaaaaaatataaaaaatttcatacctcaattactggataaaataaaatattatacttttttgtggcttaaa 35837914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 10349765 - 10349689
Alignment:
Q  23 gattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattattctttttggtggcttaaa 99  Q
    ||||||| ||||||||||||||||| ||| || |  |||| ||||||||||||||||||||||| ||||||||||||    
T  10349765 gattattcaaaaatatagaaaattctatatctcagctattagataaagtaaagtattattctttatggtggcttaaa 10349689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 95
Target Start/End: Original strand, 17051812 - 17051843
Alignment:
Q  64 gataaagtaaagtattattctttttggtggct 95  Q
    ||||||||||||||||||||||||||||||||    
T  17051812 gataaagtaaagtattattctttttggtggct 17051843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 15392566 - 15392491
Alignment:
Q  20 atagattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattattctttttggtggct 95  Q
    |||| ||||||||||||||||||||||  || ||| | | ||| ||||||||||||||| |||| || ||||||||    
T  15392566 ataggttatttaaaaatatagaaaattatatccctcagtaattagataaagtaaagtatcattcgttgtggtggct 15392491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 27324554 - 27324488
Alignment:
Q  16 aacaatagattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattatt 82  Q
    |||||||| |||||||| | ||  |||| |||||||||| | ||||||||||||||||||| |||||    
T  27324554 aacaataggttatttaacactactgaaacttccatacctcagttatttgataaagtaaagttttatt 27324488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 25388545 - 25388454
Alignment:
Q  2 tatggaatgaacacaacaatagattatttaaaaatatagaaaattccatacctaatttatttgataaagtaaagtattattctttttggtgg 93  Q
    ||||||||||| | || ||||||||||||||| | | |||| |||| ||| || | ||| | ||||||||||| ||||||||||| ||||||    
T  25388545 tatggaatgaaaaaaataatagattatttaaacagaaagaatattctataactcagttaatagataaagtaaaatattattctttatggtgg 25388454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 5205 - 5306
Alignment:
Q  119 tttatggctttcagcggtggcggtcgaacgtgttcatgtgtttgggtattggctaatcacttaatgtaa-cattggtgacaacttgtaattattatgggt 217  Q
    ||||| ||||||||  |||| ||||| || |||||||||||||||||||||| |||| | ||  ||||| | ||| ||||| ||| ||||||||| ||||    
T  5205 tttattgctttcagatgtggtggtcggacctgttcatgtgtttgggtattggttaattattttgtgtaacctttgttgacagcttataattattaggggt 5304  T
Q  218 ct 219  Q
    ||    
T  5305 ct 5306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 27864151 - 27864183
Alignment:
Q  113 attttgtttatggctttcagcggtggcggtcga 145  Q
    |||||||||||||||||||||||||| ||||||    
T  27864151 attttgtttatggctttcagcggtggtggtcga 27864183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University