View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14159_high_4 (Length: 500)
Name: NF14159_high_4
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14159_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 5159554 - 5159249
Alignment:
| Q |
19 |
attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn-gagagtacatagttagagatataattttcaataaataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
5159554 |
attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatataattt-caataaataa |
5159456 |
T |
|
| Q |
118 |
atctgtaagaactattccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcatatgacaaaacaagaagatg |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5159455 |
atctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatgacaaaacaagaagatg |
5159356 |
T |
|
| Q |
217 |
aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
5159355 |
aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaaga |
5159256 |
T |
|
| Q |
317 |
ggaaatg |
323 |
Q |
| |
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| ||||| |
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| T |
5159255 |
gaaaatg |
5159249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 192 - 324
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
192 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
291 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
|
| Q |
292 |
agtcggcatactatcgcgtcaaagaggaaatgg |
324 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 5195179 - 5195065
Alignment:
| Q |
27 |
ttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn----gagagtacatagttagagatataattttcaataaataaatctg |
122 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5195179 |
ttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagagatataattttcaataaataaatcgg |
5195080 |
T |
|
| Q |
123 |
taagaactattcccc |
137 |
Q |
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||||||||||||||| |
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| T |
5195079 |
taagaactattcccc |
5195065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
273 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
324 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
262 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
323 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 5181782 - 5181710
Alignment:
| Q |
26 |
cttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
98 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5181782 |
cttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 4843082 - 4843133
Alignment:
| Q |
19 |
attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
70 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4843082 |
attatcgcttaaccttaacattttcaagtttttcaaatgttgaacatctgca |
4843133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5172540 - 5172489
Alignment:
| Q |
19 |
attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca |
70 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
5172540 |
attatagcttaaacttaacattttcaattttttcaagtgttgaacatctgca |
5172489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
223 |
caaattcttggagaatcctagatgacaaattggtat |
258 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
81 |
agagtacatagttagagatataattttcaataaat |
115 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
325 |
aaagagtattatgtggagagtgacaaaacatattttttc |
363 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||| |
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| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
325 |
aaagagtattatgtggagagtgacaaaacatattt |
359 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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|
| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 5212757 - 5212716
Alignment:
| Q |
28 |
taaagttaacattttcaagtttttcaaatgttgaacatctgc |
69 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
5212757 |
taaacttagcattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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