View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14159_high_5 (Length: 389)
Name: NF14159_high_5
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14159_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 6018262 - 6018624
Alignment:
| Q |
13 |
aatatgatattattctttgtattattattaatattaannnnnnnaggcgtattagatgctcaaccaactagtcaagccagacaacataaagttttgcatg |
112 |
Q |
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| T |
6018262 |
aatatgatattattctttgtattattattaatattaattcttttaggcgtattagatgctcaaccaactagtcaagccagacaacataaagttttgcatg |
6018361 |
T |
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| Q |
113 |
tttttgcaagctgtaaacattcattcattcattcttatgatatgaagtgagtgtggtcttcaaatattaatctttcaaatacgcgtattccaactcacat |
212 |
Q |
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| T |
6018362 |
tttttgcaagctgtaaacattcattcattcattcttatgatatgaagtgagtgtggtcttcaaatattaatctttcaaatacgcgtattccaactcacat |
6018461 |
T |
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| Q |
213 |
caccccattacttgcgctatatactaaatattattcaaactacaatctag---acttatacttgtatccacgaaaaacaatgtagtgatattatgttcca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6018462 |
caccccattacttgcgctatatactaaatattattcaaactacaatctagtttacttatacttgtatccacgaaaaacaatgtagtgatattatgttcca |
6018561 |
T |
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| Q |
310 |
ttgaatattactggtgtgactttgtcaaaaacaattctaaattattcattaatgatacaacat |
372 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6018562 |
ttgaatattattggtgtgactttgtcaaaaacaattctaaattattcattaatgatacaacat |
6018624 |
T |
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