View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14159_low_1 (Length: 585)
Name: NF14159_low_1
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14159_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 2817001 - 2817346
Alignment:
| Q |
13 |
aatataattgagagtgtatacctaatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataagggacacaaaaa |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2817001 |
aatataattgagagtgtatacataatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataatgcacacaaaaa |
2817100 |
T |
|
| Q |
113 |
atgtataccataaatttgaagttcatgatacgtcaagtgtataatatacatgtgtgtacccaaaaaataataatgaagagtaggtatgcaaaaattcaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817101 |
atgtataccataaatttgaagttcatgatacgtcaagtgtataatatacatgtgtgtacccaaaaaataataatgaagagtaggtatgcaaaaattcaaa |
2817200 |
T |
|
| Q |
213 |
tttagggtatgaagaatggaaatataggcatgcaatnnnnnnnnnnttgtttttataaaaataagaaatgatgaaggcttctctcnnnnnnngaaatgat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2817201 |
tttagggtatgaagaatggaaatataggcatgcaat-aaaaaaaaattgtttttataaaaataagaaatgatgaaggtttctctcaaaaaaagaaatgat |
2817299 |
T |
|
| Q |
313 |
gaaggagtgcagttcgatttttggactagcggatgacataagttaat |
359 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2817300 |
gaaggagtgcagtccgatttttggactagcggatgacataagttaat |
2817346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 389 - 567
Target Start/End: Original strand, 2817348 - 2817526
Alignment:
| Q |
389 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattg |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2817348 |
tgaataagatagttgatattagataaacatgtttaatgtgaatcatcatcatctctgcacctcatgccatcatcttcagtggcttagttttctaggattg |
2817447 |
T |
|
| Q |
489 |
taagcttcgcgatttggacaatttagattgcgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817448 |
taagcttcgcgatttggacaatttagattgtgttggtatggtgttgttgttcagttcattgcttcaactattgggttcc |
2817526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 788128 - 788276
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | ||| || | ||||||| ||| || ||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
788128 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
788227 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
788228 |
cgttggtgcggttttgttattcaattcattgtttcaactgttggtttcc |
788276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 30314443 - 30314591
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | ||| || | ||||||| ||| || ||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
30314443 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
30314542 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
30314543 |
cgttggtgcggttttgttattcaattcattgtttcaactgttggtttcc |
30314591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 4052060 - 4052208
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | ||| || | ||||||| ||| || | ||||||||||||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
4052060 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttaatggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
4052159 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
4052160 |
cgttggtgcggttttgttattcaattcattgtttcaactgttggtttcc |
4052208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 419 - 567
Target Start/End: Complemental strand, 15032553 - 15032405
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | ||| || | |||||| ||| || | ||||||||||||||||||||||||||||| | | |||||| |||||||||| |
|
|
| T |
15032553 |
gtttaatgtgaatcatcattgtctctgcagcctatgccaccatctttactggctttgttttctaggattgtaagcttcaccacttggacgatttagattg |
15032454 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
15032453 |
cgttggtgcggttttgttattcaattcattgtttcaactgttggtttcc |
15032405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 419 - 567
Target Start/End: Original strand, 12519855 - 12520003
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | | | || | ||||||| ||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
12519855 |
gtttaatgtgaatcatcattgtctttgcagcccatgccaccatctttagtggctttgttttctaggattgtaagcttcagcatttggacgatttagattg |
12519954 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
12519955 |
cgttggtgcggttttgttattcaattcattgtttcaactgttggtttcc |
12520003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 419 - 567
Target Start/End: Complemental strand, 25073817 - 25073669
Alignment:
| Q |
419 |
gtttaatgtgaatcatcatcatatctccacctcatgccatcattttcagtggctttgttttctaggattgtaagcttcgcgatttggacaatttagattg |
518 |
Q |
| |
|
||||||||||||||||||| | ||| || | ||||||| ||| || | ||||||||||||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
25073817 |
gtttaatgtgaatcatcattgtctctgcagcccatgccaccatctttaatggctttgttttctaggattgtaagcttcaccatttggacgatttagattg |
25073718 |
T |
|
| Q |
519 |
cgttggtacggtgttgttgttcagttcattgcttcaactattgggttcc |
567 |
Q |
| |
|
||||||| || | ||||| |||| ||||||| ||||||| |||| |||| |
|
|
| T |
25073717 |
cgttggtgcgattttgttattcaattcattgtttcaactgttggtttcc |
25073669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University