View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14159_low_2 (Length: 572)

Name: NF14159_low_2
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14159_low_2
NF14159_low_2
[»] chr4 (4 HSPs)
chr4 (253-564)||(25724888-25725200)
chr4 (18-166)||(25724658-25724804)
chr4 (220-258)||(18915076-18915114)
chr4 (220-258)||(46676528-46676566)
[»] chr8 (5 HSPs)
chr8 (417-564)||(9277190-9277337)
chr8 (423-564)||(31713396-31713536)
chr8 (423-461)||(31713878-31713916)
chr8 (415-461)||(40599879-40599925)
chr8 (220-248)||(444127-444155)
[»] chr2 (4 HSPs)
chr2 (423-564)||(4879056-4879196)
chr2 (220-258)||(12124538-12124576)
chr2 (220-258)||(31963096-31963134)
chr2 (220-258)||(40099413-40099451)
[»] chr3 (5 HSPs)
chr3 (423-459)||(50414475-50414511)
chr3 (423-461)||(53343866-53343904)
chr3 (220-257)||(2662086-2662123)
chr3 (224-257)||(9734785-9734818)
chr3 (220-248)||(47185834-47185862)
[»] chr1 (3 HSPs)
chr1 (423-502)||(27746127-27746206)
chr1 (220-258)||(2817403-2817441)
chr1 (222-258)||(13261164-13261200)
[»] scaffold0154 (1 HSPs)
scaffold0154 (220-258)||(10787-10825)
[»] chr7 (2 HSPs)
chr7 (220-250)||(28703509-28703539)
chr7 (222-250)||(3196674-3196702)
[»] chr5 (3 HSPs)
chr5 (220-250)||(28604448-28604478)
chr5 (220-258)||(34206220-34206258)
chr5 (419-467)||(2028333-2028381)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 253 - 564
Target Start/End: Original strand, 25724888 - 25725200
Alignment:
Q  253 gggacagtaaattactaaatttgataagaataacaatagttcgtcttaaacaattgggtggttttgctctaattttaaaaattaggtccttaagaaaaag 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25724888 gggacattaaattactaaatttgataagaataacaatagttcgtcttaaacaattgggtggttttgctctaattttaaaaattaggtccttaagaaaaag 25724987  T
Q  353 aagtacaagaaactaaaaaagagtcactcnnnnnnnnnnnnn-ggtacataaaagagtcactctttatttaggtggattttagggtgagggttctaacaa 451  Q
    |||||||||||||||||||||||||||||              |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  25724988 aagtacaagaaactaaaaaagagtcactcttttttttttttttggtacataaaagagtcacactttatttaggtggattttaaggtgagggttctaacaa 25725087  T
Q  452 gtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctaccatacactttttacacaatatcacacttct 551  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25725088 atccctcaccgatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttgtatcctaccatacactttttacacaatatcacacttct 25725187  T
Q  552 ttgttttcttctc 564  Q
    |||||||||||||    
T  25725188 ttgttttcttctc 25725200  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 25724658 - 25724804
Alignment:
Q  18 aaatgggtcaaatgtttgcgtggtgcataaaaactaagtatatgtttaattgcattttttaatctatttcacatagtgtccacagattgatattctgtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  25724658 aaatgggtcaaatgtttgcgtggtgcataaaaactaagtatatgtttaattgcattttttaatctatttcac--agtgtccacagattgatattctatta 25724755  T
Q  118 actcccnnnnnnntgtttagatttattagatgattgagtgaatattgag 166  Q
    ||||||       ||||||||||||||||||||||||||||||||||||    
T  25724756 actcccaaaaaaatgtttagatttattagatgattgagtgaatattgag 25724804  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 18915076 - 18915114
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  18915076 tgcattgtccttaccaactgagctaaactcacggggaca 18915114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 46676528 - 46676566
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  46676528 tgcattgtccttaccaactgagctaagctcatggggaca 46676566  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 9277190 - 9277337
Alignment:
Q  417 tatttaggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctat 516  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  9277190 tatttgggtggattctagggtgagggttctaacaagtccctcatcggtggaccattgtgaaaaacattaatagccatttgattaatctaattgcttgtat 9277289  T
Q  517 cctaccatacactttttacacaatatcacacttctttgttttcttctc 564  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  9277290 cctaccatacactctttacacaatatcacgcttctttgttttcttctc 9277337  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 31713396 - 31713536
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctacc 522  Q
    |||||||| |||||||| ||||||||||||||||||| |  |||| |||| | ||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  31713396 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaacattaatatccattcgattaatctaagtgcttgtatcctacc 31713495  T
Q  523 atacactttttacacaatatcacacttctttgttttcttctc 564  Q
     |||||||| | ||||||||||||||||||| ||||||||||    
T  31713496 -tacactttatgcacaatatcacacttctttcttttcttctc 31713536  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 31713916 - 31713878
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctcacc 461  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  31713916 ggtggattctagggtgagggttctaacaagtccctcacc 31713878  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 40599879 - 40599925
Alignment:
Q  415 tttatttaggtggattttagggtgagggttctaacaagtccctcacc 461  Q
    ||||||| |||||||| |||| ||||||||| |||||||||||||||    
T  40599879 tttattttggtggattctaggatgagggttcaaacaagtccctcacc 40599925  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 444155 - 444127
Alignment:
Q  220 tgcattgtctttaccaactgagctaaact 248  Q
    |||||||||||||||||||||||||||||    
T  444155 tgcattgtctttaccaactgagctaaact 444127  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 4879056 - 4879196
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctacc 522  Q
    |||||||| |||||||| ||||||||||||||||||| |  |||| |||| | ||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  4879056 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaacattaatatccattcgattaatctaagtgcttgtatcctacc 4879155  T
Q  523 atacactttttacacaatatcacacttctttgttttcttctc 564  Q
     |||||||| | ||||||||||||||||||| ||||||||||    
T  4879156 -tacactttatgcacaatatcacacttctttcttttcttctc 4879196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 12124576 - 12124538
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  12124576 tgcattgtccttaccaactgagctaaactcacggggaca 12124538  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 31963096 - 31963134
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  31963096 tgcattgtccttaccaactgagctatactcatggggaca 31963134  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 40099413 - 40099451
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  40099413 tgcattgtccttaccaactgagctaagctcatggggaca 40099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 459
Target Start/End: Complemental strand, 50414511 - 50414475
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctca 459  Q
    |||||||||||||||||||||| ||||||||||||||    
T  50414511 ggtggattttagggtgagggttttaacaagtccctca 50414475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 53343904 - 53343866
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctcacc 461  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcacc 53343866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 2662123 - 2662086
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggac 257  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  2662123 tgcattgtctttaccaactgagctaaacttatgaggac 2662086  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 9734785 - 9734818
Alignment:
Q  224 ttgtctttaccaactgagctaaactcatggggac 257  Q
    |||||||||||||||||||||| |||||||||||    
T  9734785 ttgtctttaccaactgagctaagctcatggggac 9734818  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 47185834 - 47185862
Alignment:
Q  220 tgcattgtctttaccaactgagctaaact 248  Q
    |||||||||||||||||||||||||||||    
T  47185834 tgcattgtctttaccaactgagctaaact 47185862  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 27746206 - 27746127
Alignment:
Q  423 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaat 502  Q
    |||||||| ||| |||||||||| |  ||||||||||||| |||||||  ||||| |||| ||| ||||||| |||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtggatcaccgtgaataacaataagagccattagattaat 27746127  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 2817403 - 2817441
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  2817403 tgcattgtccttaccaactgagctaaattcatggggaca 2817441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 13261200 - 13261164
Alignment:
Q  222 cattgtctttaccaactgagctaaactcatggggaca 258  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  13261200 cattgtctttaccaactgagttaaactcatcgggaca 13261164  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 10787 - 10825
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  10787 tgcattgtccttaccaactgagctaaactcacggggaca 10825  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 28703539 - 28703509
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactca 250  Q
    |||||||||||||||||||||||||||||||    
T  28703539 tgcattgtctttaccaactgagctaaactca 28703509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 3196674 - 3196702
Alignment:
Q  222 cattgtctttaccaactgagctaaactca 250  Q
    |||||||||||||||||||||||||||||    
T  3196674 cattgtctttaccaactgagctaaactca 3196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 28604448 - 28604478
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactca 250  Q
    |||||||||||||||||||||||||||||||    
T  28604448 tgcattgtctttaccaactgagctaaactca 28604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 34206258 - 34206220
Alignment:
Q  220 tgcattgtctttaccaactgagctaaactcatggggaca 258  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  34206258 tgcattgtctttaccaactgagttaaactcacggggaca 34206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 2028333 - 2028381
Alignment:
Q  419 tttaggtggattttagggtgagggttctaacaagtccctcaccaatgga 467  Q
    ||||||||||||||||||||||||||| |  ||||||||| || |||||    
T  2028333 tttaggtggattttagggtgagggttcaactaagtccctcgccgatgga 2028381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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