View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14159_low_3 (Length: 506)
Name: NF14159_low_3
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14159_low_3 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 36374912 - 36375417
Alignment:
| Q |
1 |
ggaagaaaaatctaacacaagtggtggctgtgctatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374912 |
ggaagaaaaatctaacacaagtggtggctgtgttatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaa |
36375011 |
T |
|
| Q |
101 |
ttatttccagagaaaagaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375012 |
ttatttccagagaaaagaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatc |
36375111 |
T |
|
| Q |
201 |
ttatccacagcagtcgaacccagagacgttcgatgacaccaaaatcagtggttctacctggagtttcaaattctaatggtgtcaagcatgattttgattg |
300 |
Q |
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|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375112 |
ttatccacagcagtcaaacccagagacattcgatgacaccaaaatcagtggttctacctggagtttcaaattctaatggtgtcaagcatgattttgattg |
36375211 |
T |
|
| Q |
301 |
tctacgaaagatcaaaagctggaattcacaccctagtgttcttgtcatgggctattcctcatttttagccttaatgagaacagaagatnnnnnnnnntca |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36375212 |
tctacaaaagatcaaaagctggaattcacaccctagtgttcttgtcatgggctattcctcatttttagccttaatgagaacagaagataaaaaaaattca |
36375311 |
T |
|
| Q |
401 |
cacagaaagcgcacggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375312 |
cacagaaagcgcacggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagt |
36375411 |
T |
|
| Q |
501 |
gcttaa |
506 |
Q |
| |
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|||||| |
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| T |
36375412 |
gcttaa |
36375417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 32250567 - 32250061
Alignment:
| Q |
1 |
ggaagaaaaatctaacacaagtggtggctgtgctatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaa |
100 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
32250567 |
ggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgtaagttacttgaag |
32250468 |
T |
|
| Q |
101 |
ttatttccagagaaaagaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatc |
200 |
Q |
| |
|
|||||||||| |||| |||| | |||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| ||| | ||||||| |||| |
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| T |
32250467 |
ttatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagatttctgtgccggtttatc |
32250368 |
T |
|
| Q |
201 |
ttatccacagcagtcgaac----ccag--agacgttcgatgacaccaaaatcagtggttctacctggagtttcaa---attctaatggtgtcaagcatga |
291 |
Q |
| |
|
||||||| || ||||||| |||| | |||||| ||||||||||||| || |||| |||||| || ||| ||||| || |||||| |||| |
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| T |
32250367 |
ttatccatggccgtcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgt |
32250268 |
T |
|
| Q |
292 |
ttttgattgtctacgaaagat-caaaagctggaattcacaccctagtgttcttgtcatgggctattcctcatttttagccttaatgagaacagaagatnn |
390 |
Q |
| |
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||| |||||||| | ||||| |||||| ||| | |||||||||||||||||||||||||||||| | ||||||||| ||||||||| || ||||| |
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| T |
32250267 |
tttggattgtctcagcaagatacaaaag-tggcactcacaccctagtgttcttgtcatgggctatacttcatttttacaattaatgagatcaaaagatac |
32250169 |
T |
|
| Q |
391 |
nnnnnnntcacacagaaagcgcacggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaag |
490 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||| || | ||||| | |
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| T |
32250168 |
aaaattcgaacacagaaaatacatggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaagg |
32250069 |
T |
|
| Q |
491 |
ttgaggaa |
498 |
Q |
| |
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||||||| |
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| T |
32250068 |
ctgaggaa |
32250061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 506
Target Start/End: Complemental strand, 8845079 - 8844590
Alignment:
| Q |
17 |
acaagtggtggctgtgctatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaattatttccagagaaaa |
116 |
Q |
| |
|
|||| |||||| |||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| | ||||||| ||||| |
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| T |
8845079 |
acaaatggtggatgtgtcatatcacatgctcctggagctggaaaaacctttctcgtcatttcttttcttgtaagttacttgaagctctttccagggaaaa |
8844980 |
T |
|
| Q |
117 |
gaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatcttatccacagcagtcg |
216 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||||||||| ||||||||| |||||||||| |||| |||| |||||||||||||| || ||| |
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| T |
8844979 |
gaccattagtccttgcaccaaaatccacactctacacatggtgcaaagagttcaaaaaatggaaggttcctgtgcccgtgtatcttatccaaggccgtca |
8844880 |
T |
|
| Q |
217 |
aacccagagacgttcgatgacaccaaaatcagtggttctacctggagtttcaa---attctaatggtgtcaagcatgattttgattgtctacgaaagatc |
313 |
Q |
| |
|
|||||||||| ||| | | | |||||| | |||||| || |||||| ||| |||| || ||| || |||| ||| |||||||| |||| || |
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|
| T |
8844879 |
aacccagagagattcaacggctccaaaacctacggttcttcccggagttccaagaccttctggtgatgtaaaacatgttttggattgtcttggaaaaata |
8844780 |
T |
|
| Q |
314 |
aaaagctggaattcacaccctagtgttcttgtcatgggctattcctcatttttagccttaatgagaacagaagatnnnnnnnnntcacacagaaagcgca |
413 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||| | ||||| ||||||||||| || |
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| T |
8844779 |
aaaaagtggcattcacacccaagtgttcttgtcatgggctacacttcatttttagccttaatgag---acaagatacaaaatttgcacacagaaagtaca |
8844683 |
T |
|
| Q |
414 |
cggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaa |
506 |
Q |
| |
|
||| ||| | ||| | ||||| || ||| |||||||||||||||| || |||||||||||||| || | ||||| ||||||||| ||||||| |
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|
| T |
8844682 |
tggcgaaaactttgcgagaaagccctggaatcttgatacttgatgaaggtcacaatcctagaagcacaaaatcaaggttgaggaaatgcttaa |
8844590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 8822821 - 8822935
Alignment:
| Q |
54 |
ctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaattatttccagagaaaagaccattggtcctagctccaaagaccacactctacac |
153 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| || ||||| ||||||| || |||||||||||| |||| | ||||| | ||||| ||||| |
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|
| T |
8822821 |
ctggaaaaacctttctcatcatttcttttcgtgtaaggtacttgaagttatttctagggaaaagaccattaatccttacaccaaaatctacactatacac |
8822920 |
T |
|
| Q |
154 |
atggcaaaaagagtt |
168 |
Q |
| |
|
|||||| |||||||| |
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| T |
8822921 |
atggcacaaagagtt |
8822935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 8809201 - 8808990
Alignment:
| Q |
3 |
aagaaaaatctaacacaagtggtggctgtgctatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagctatttgaaatt |
102 |
Q |
| |
|
|||||| |||| | ||||||| ||| |||| ||||| ||||||| | ||||||||||| ||||||||| ||| ||||||||||||| || ||||| || |
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|
| T |
8809201 |
aagaaagatctgaaacaagtgttggatgtgtcatatcacatgctcttagagctggaaaa-cctttctcaacatttcttttcttgtaaattacttgaagtt |
8809103 |
T |
|
| Q |
103 |
atttccagagaaaagaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatctt |
202 |
Q |
| |
|
||||| | |||||||||||| | || || || || |||||||||||||||| ||| ||||| |||||||||| || |||| ||||||||| |
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|
| T |
8809102 |
atttctatggaaaagaccattaatacttgcgccgaaatttacactctacacatggcgcaaatagttcaaaaaatggaaggttattgtgcccgtgtatctt |
8809003 |
T |
|
| Q |
203 |
atccacagcagtc |
215 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
8809002 |
atccacaacagtc |
8808990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 35959638 - 35959570
Alignment:
| Q |
425 |
ttgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttg |
493 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||| ||||| |||| |
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| T |
35959638 |
ttgagggaaagtcctggactcttggtacttgatgaaggtcacaaccctagaagtaccaaatcaaggttg |
35959570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 35960040 - 35959970
Alignment:
| Q |
23 |
ggtggctgtgctatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagcta |
93 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||| ||||| |
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|
| T |
35960040 |
ggtggctgtgtgatatctcatactcctggagccggaaaaacttttctcatcattgcttttcttgttagcta |
35959970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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