View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14159_low_4 (Length: 500)

Name: NF14159_low_4
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14159_low_4
NF14159_low_4
[»] chr4 (13 HSPs)
chr4 (19-323)||(5159249-5159554)
chr4 (192-324)||(5181476-5181608)
chr4 (27-137)||(5195065-5195179)
chr4 (273-324)||(5194831-5194882)
chr4 (262-323)||(4843278-4843339)
chr4 (26-98)||(5181710-5181782)
chr4 (19-70)||(4843082-4843133)
chr4 (19-70)||(5172489-5172540)
chr4 (223-258)||(5172339-5172374)
chr4 (81-115)||(4843149-4843183)
chr4 (325-363)||(4843423-4843461)
chr4 (325-359)||(5172102-5172136)
chr4 (28-69)||(5212716-5212757)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 5159554 - 5159249
Alignment:
Q  19 attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn-gagagtacatagttagagatataattttcaataaataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||    
T  5159554 attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatataattt-caataaataa 5159456  T
Q  118 atctgtaagaactattccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcatatgacaaaacaagaagatg 216  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  5159455 atctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatgacaaaacaagaagatg 5159356  T
Q  217 aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  |||||||||||||||    
T  5159355 aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagttggcaacctatcgcgtcaaaga 5159256  T
Q  317 ggaaatg 323  Q
    | |||||    
T  5159255 gaaaatg 5159249  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 192 - 324
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
Q  192 gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga 291  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  5181608 gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga 5181509  T
Q  292 agtcggcatactatcgcgtcaaagaggaaatgg 324  Q
    ||||||||  |||||||||||||||||||||||    
T  5181508 agtcggcaacctatcgcgtcaaagaggaaatgg 5181476  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 5195179 - 5195065
Alignment:
Q  27 ttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn----gagagtacatagttagagatataattttcaataaataaatctg 122  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||| |    
T  5195179 ttaaacttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagagatataattttcaataaataaatcgg 5195080  T
Q  123 taagaactattcccc 137  Q
    |||||||||||||||    
T  5195079 taagaactattcccc 5195065  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
Q  273 gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 324  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5194882 gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg 5194831  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
Q  262 aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg 323  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  4843278 aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg 4843339  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 5181782 - 5181710
Alignment:
Q  26 cttaaagttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga 98  Q
    |||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  5181782 cttaaacttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga 5181710  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 4843082 - 4843133
Alignment:
Q  19 attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca 70  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  4843082 attatcgcttaaccttaacattttcaagtttttcaaatgttgaacatctgca 4843133  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5172540 - 5172489
Alignment:
Q  19 attatagcttaaagttaacattttcaagtttttcaaatgttgaacatctgca 70  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  5172540 attatagcttaaacttaacattttcaattttttcaagtgttgaacatctgca 5172489  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
Q  223 caaattcttggagaatcctagatgacaaattggtat 258  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5172374 caaattcttggagaatccttgatgacaaattggtat 5172339  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
Q  81 agagtacatagttagagatataattttcaataaat 115  Q
    |||||||||||||||||||||||| ||||||||||    
T  4843149 agagtacatagttagagatataatattcaataaat 4843183  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
Q  325 aaagagtattatgtggagagtgacaaaacatattttttc 363  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  4843423 aaagagtattatgtggagagtggcaaaccatattttttc 4843461  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
Q  325 aaagagtattatgtggagagtgacaaaacatattt 359  Q
    |||||||||||||||||||||| ||||||||||||    
T  5172136 aaagagtattatgtggagagtggcaaaacatattt 5172102  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 5212757 - 5212716
Alignment:
Q  28 taaagttaacattttcaagtttttcaaatgttgaacatctgc 69  Q
    |||| ||| ||||||||||||| |||||||||||||||||||    
T  5212757 taaacttagcattttcaagtttctcaaatgttgaacatctgc 5212716  T

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