View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14159_low_5 (Length: 490)
Name: NF14159_low_5
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14159_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 16841387 - 16840925
Alignment:
| Q |
12 |
agcagcacagagaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttactccgatnnnnnnnnnnnnnnnagtagn |
111 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16841387 |
agcagcacaaagaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttactccgattctctctctcttctcagtagt |
16841288 |
T |
|
| Q |
112 |
nnnnnnnctttctactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaagttgtggggtattctc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16841287 |
tttttttctttctactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaagttgtggggtattctc |
16841188 |
T |
|
| Q |
212 |
ttattttgttgtgacttgtgaggtgcttttcttaaccgtatgtatagtgatatgacaattggcaacaatattaacaaacatacaaaagtttggtgtttaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16841187 |
ttattttgttgtgacttgtgaggtgcttttcttaaccgtatgtatagtgatatgacaattggcaacaatattaacaaacatacaaaagtttggtgtttaa |
16841088 |
T |
|
| Q |
312 |
taaactaaataaaatcttggaagaccaagactttttgaacgtaattagcactaaagttggaatcttattgcaagttgtgatattaataagataacaaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16841087 |
taaactaaataaaatcttggaagaccaagactttttgaacgtaattagcact-aagttggaatcttattgcaagttgtgatattaataagataacaaatt |
16840989 |
T |
|
| Q |
412 |
catttaagtagcaatcacaatgaataatttgcttaaaa--atatacacctgaaatgaagaaaat |
473 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16840988 |
catttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaat |
16840925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 253 - 473
Target Start/End: Original strand, 37699058 - 37699281
Alignment:
| Q |
253 |
gtatagtgatatgacaattggcaacaatattaa--------caaacatacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactt |
344 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| ||| |||| |||||||||||||| | |||||||||||| ||||||||| |||||||||| |
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| T |
37699058 |
gtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagactt |
37699157 |
T |
|
| Q |
345 |
tttgaacgtaattagcactaaagttggaatcttattgcaagttgtgatattaataagataacaaattcatttaagtagcaatcacaatgaataatttgct |
444 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
37699158 |
ttcgaacgtaattagcactaaagttggaatcttattgcaagttgtga---taataagataacaaattcatttaagtagcaatcagaatgagtaatttgct |
37699254 |
T |
|
| Q |
445 |
taaaaatatacacctgaaatgaagaaaat |
473 |
Q |
| |
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||||| |||||||| ||||||||||||| |
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|
| T |
37699255 |
taaaa--atacacctaaaatgaagaaaat |
37699281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 253 - 473
Target Start/End: Original strand, 37437602 - 37437821
Alignment:
| Q |
253 |
gtatagtgatatgacaattggcaacaatattaa--------caaacatacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| | |||||||||||| || ||||||||||||||||| |
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|
| T |
37437602 |
gtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagactt |
37437701 |
T |
|
| Q |
345 |
tttgaacgtaattagcactaaagttggaatcttattgcaagttgtgatattaataagataacaaattcatttaagtagcaatcacaatgaataatttgct |
444 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
37437702 |
ttcgaacgtaattagc----aagttggaatcttattgcaagttgtga---taataagataacaaattcatttaagtagcaatcagaatgagtaatttgct |
37437794 |
T |
|
| Q |
445 |
taaaaatatacacctgaaatgaagaaaat |
473 |
Q |
| |
|
||||| |||||||||||||||||||||| |
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|
| T |
37437795 |
taaaa--atacacctgaaatgaagaaaat |
37437821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 253 - 417
Target Start/End: Original strand, 37698702 - 37698864
Alignment:
| Q |
253 |
gtatagtgatatgacaattggcaacaatattaacaaacatacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
37698702 |
gtatagtgatatgacaattggcaacaatattaacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacg |
37698801 |
T |
|
| Q |
353 |
----taattagcactaaagttggaatcttattgcaagttgtgatattaataagataacaaattcattta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37698802 |
taattaattagcactaaagttggaatcttattgcaagttgtg------ataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 290 - 473
Target Start/End: Original strand, 37704582 - 37704756
Alignment:
| Q |
290 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcactaaagttggaatcttattgcaagttgt |
389 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
37704582 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
37704680 |
T |
|
| Q |
390 |
gatattaataagataacaaattcatttaagtagcaatcacaatgaataatttgcttaaaaatatacacctgaaatgaagaaaat |
473 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||| |
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|
| T |
37704681 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa--atacacctgaaatgaagaaaat |
37704756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 37437362 - 37437431
Alignment:
| Q |
21 |
gagaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttactccgat |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37437362 |
gagaacaagtgaagggcaaaacaaggcaaaagaataaaaaaggaccccatttagagcaacttacaccgat |
37437431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 37704379 - 37704445
Alignment:
| Q |
127 |
tttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaag |
196 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37704379 |
tttgatgatttaggatataccaattgattagcctc---tatttatataggaaacataacctgaaactaag |
37704445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 37437442 - 37437511
Alignment:
| Q |
124 |
tactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaag |
196 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
37437442 |
tactttgatgatttaggatataccaaatgattagcctc---tatttatataggaaacataacttgaaactaag |
37437511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37698455 - 37698523
Alignment:
| Q |
22 |
agaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttactccgat |
90 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37698455 |
agaaaaagtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagagcaacttacaccgat |
37698523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 37698554 - 37698625
Alignment:
| Q |
124 |
tactttgatgatttacg----atataccaactgattagcctcctctatttatataggaaacataacctgaaacta |
194 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37698554 |
tactttgatgatttacgtaggatataccaattgattagcctc---tatttatataggaaacataacctgaaacta |
37698625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 37391438 - 37391377
Alignment:
| Q |
23 |
gaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttac |
84 |
Q |
| |
|
||||||||||| || |||| ||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
37391438 |
gaacaagtgaaaggtaaaataaggcaataaaataaacaaggaccccatttagagcaacttac |
37391377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 14554718 - 14554780
Alignment:
| Q |
22 |
agaacaagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttac |
84 |
Q |
| |
|
|||| ||||||| || |||| ||||||| | |||||||||||| ||||||||||| ||||||| |
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|
| T |
14554718 |
agaaaaagtgaaaggtaaaataaggcaatagaataaaaaaggatcccatttagagaaacttac |
14554780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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