View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14159_low_9 (Length: 307)

Name: NF14159_low_9
Description: NF14159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14159_low_9
NF14159_low_9
[»] chr6 (42 HSPs)
chr6 (63-297)||(27609466-27609700)
chr6 (63-297)||(27696935-27697169)
chr6 (63-297)||(27716845-27717079)
chr6 (63-297)||(27680564-27680798)
chr6 (63-297)||(27704609-27704843)
chr6 (68-297)||(27591366-27591595)
chr6 (67-297)||(31286158-31286379)
chr6 (68-297)||(27675963-27676194)
chr6 (103-297)||(27603080-27603275)
chr6 (117-287)||(28787865-28788035)
chr6 (117-287)||(28793986-28794156)
chr6 (160-297)||(26648072-26648209)
chr6 (160-297)||(26754040-26754177)
chr6 (154-297)||(26624864-26625007)
chr6 (154-297)||(26730841-26730984)
chr6 (67-297)||(26804060-26804291)
chr6 (198-277)||(26813171-26813250)
chr6 (182-287)||(26863183-26863288)
chr6 (154-283)||(27529741-27529873)
chr6 (230-297)||(26885684-26885751)
chr6 (181-297)||(27663671-27663783)
chr6 (195-297)||(25491785-25491887)
chr6 (64-227)||(27425962-27426125)
chr6 (230-295)||(26960729-26960794)
chr6 (63-95)||(26625026-26625058)
chr6 (63-95)||(26731003-26731035)
chr6 (180-297)||(26951345-26951458)
chr6 (230-297)||(26657576-26657643)
chr6 (230-297)||(26763547-26763614)
chr6 (242-295)||(25075483-25075536)
chr6 (21-49)||(25491606-25491634)
chr6 (21-49)||(26804315-26804343)
chr6 (21-49)||(26813342-26813370)
chr6 (21-49)||(26951594-26951622)
chr6 (21-49)||(26960923-26960951)
chr6 (21-49)||(26979233-26979261)
chr6 (21-49)||(27609426-27609454)
chr6 (21-49)||(27663504-27663532)
chr6 (21-49)||(27680810-27680838)
chr6 (21-49)||(27696895-27696923)
chr6 (21-49)||(27716805-27716833)
chr6 (21-49)||(31286401-31286429)
[»] chr8 (2 HSPs)
chr8 (64-297)||(29272185-29272418)
chr8 (21-49)||(29272144-29272172)
[»] scaffold0349 (1 HSPs)
scaffold0349 (136-297)||(1957-2119)
[»] chr1 (1 HSPs)
chr1 (63-297)||(266702-266929)
[»] scaffold1870 (1 HSPs)
scaffold1870 (103-287)||(393-578)
[»] scaffold0277 (2 HSPs)
scaffold0277 (103-286)||(3088-3272)
scaffold0277 (103-286)||(12051-12235)
[»] scaffold0419 (1 HSPs)
scaffold0419 (103-287)||(9111-9297)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-227)||(61238-61401)
[»] chr4 (1 HSPs)
chr4 (64-227)||(18075430-18075593)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 27609466 - 27609700
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27609466 catgaatcaaccacaataaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagag 27609565  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27609566 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 27609665  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    |||||||||||||||||||||||||||||||||||    
T  27609666 cctacttctttctccaggctctttaattgattctt 27609700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 27696935 - 27697169
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  27696935 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaatagag 27697034  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  27697035 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgagttatatcatcctgacagcataa 27697134  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    ||||||||||||||||||||||||| |||||||||    
T  27697135 cctacttctttctccaggctctttagttgattctt 27697169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 27716845 - 27717079
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||  |||||||||    
T  27716845 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctcgttttagatgatcatatttagttcaaaaagag 27716944  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716945 caaagttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 27717044  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    |||||||||||||||||||||||||||||||||||    
T  27717045 cctacttctttctccaggctctttaattgattctt 27717079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 63 - 297
Target Start/End: Complemental strand, 27680798 - 27680564
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27680798 catgaatcaaccacaataaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagag 27680699  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| || ||||  |||||    
T  27680698 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcatactcacagtgttttcttttaaaacatgaattatatcttcttgacgccataa 27680599  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    |||||||| ||||||||||||||||  ||||||||    
T  27680598 cctacttcgttctccaggctctttaggtgattctt 27680564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 27704609 - 27704843
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||| |||||| ||| |||||||||||| | | | || |  |||| ||| | || |||| ||||||| ||||| ||||||||||  |||||||||    
T  27704609 catgaatcagccacaacaaatataagatatagagaaacttacttcgaattaagtaataaaaaatactagtatgagatggtcatatttagtccaaaaagag 27704708  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||| || ||||||||    
T  27704709 caaagtcatattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttcttttaagacattaactatatcatcatggcagcataa 27704808  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    |||||||||||||||||||||||||||||||||||    
T  27704809 cctacttctttctccaggctctttaattgattctt 27704843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 27591366 - 27591595
Alignment:
Q  68 atcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaag 167  Q
    ||||||||||||||||||  | || ||| | ||| |||||||||| |||| ||| | || ||||||| ||||| ||||||||||  ||||| ||||||||    
T  27591366 atcaaccacaataaaaatctgttacagagaaatttacatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaag 27591465  T
Q  168 tcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctac 267  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||| | |||||||| |    
T  27591466 ttgtattaaaactaaataacaaattgaacatagatatcaatcttacgcacagtgttttcttttaaaacatgaactatatcatcttgagaccataacctgc 27591565  T
Q  268 ttctttctccaggctctttaattgattctt 297  Q
    ||||||||||||||||||||  ||||||||    
T  27591566 ttctttctccaggctctttaggtgattctt 27591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 31286379 - 31286158
Alignment:
Q  67 aatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaa 166  Q
    |||||||||||||||||||||||||| || | ||| |||||||||| ||| |||| |||| ||||||| ||||| |||||         |||||||||||    
T  31286379 aatcaaccacaataaaaataagatatggagaaatttacatgtaattaagtaaaaataaatactagtatgagatggtcata---------aaaagagcaaa 31286289  T
Q  167 gtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataaccta 266  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||  ||||| || ||||||||||||| ||||| |||| ||||    
T  31286288 gtcgttttaaaactaaataacaaattgaacatagatatcaatcttactcacagtgttttcatttaaagcatgaactatatcatcttgacaccatagccta 31286189  T
Q  267 cttctttctccaggctctttaattgattctt 297  Q
    ||||||||||| |||||||||  ||||||||    
T  31286188 cttctttctcctggctctttaggtgattctt 31286158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 27675963 - 27676194
Alignment:
Q  68 atcaaccacaataaaaataagatatagaaatattaacatgtaattgagtg--aaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaa 165  Q
    ||||||||||||||||||    || ||| | ||| |||||||||| ||||  |||| |||| ||| ||| ||||| ||||||||||  ||||| ||||||    
T  27675963 atcaaccacaataaaaatcttttacagagaaatttacatgtaattaagtggaaaaaaaaatactaatatgagatggtcatatttagtccaaaatgagcaa 27676062  T
Q  166 agtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacct 265  Q
    | | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| | ||||||||    
T  27676063 aattgtattaaaactaaataacaaattgaacatagatatcaatcttactcacagtgttttctgttaaaacatgaactatatcatcttgagaccataacct 27676162  T
Q  266 acttctttctccaggctctttaattgattctt 297  Q
     |||||||||||||||||||||  ||||||||    
T  27676163 gcttctttctccaggctctttaggtgattctt 27676194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 297
Target Start/End: Original strand, 27603080 - 27603275
Alignment:
Q  103 acatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaa-gtcgtattaaaactaaataacaaaatgatcataga 201  Q
    |||||||||| |||| ||| ||||  |||||| ||||||||||||||||  |||||||| |||| ||| |||||||||||||||||||| ||||  || |    
T  27603080 acatgtaattaagtggaaaaaaataatagtatgagatgatcatatttagtccaaaaagaccaaaagtcatattaaaactaaataacaaattgatattata 27603179  T
Q  202 tatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 297  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||| || ||||| ||||||||||||||||||||||||||||||  ||||||||    
T  27603180 tatcaatcttactcacagtgttttctgttagaacatgaactatatcgtcttgacaccataacctacttctttctccaggctctttaggtgattctt 27603275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 28788035 - 28787865
Alignment:
Q  117 gaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactca 216  Q
    ||||| |||| ||||||| ||||| ||||||||||  |||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||||| ||||||    
T  28788035 gaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactca 28787936  T
Q  217 cagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttta 287  Q
    | ||||||||| ||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28787935 cggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctcttta 28787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 28794156 - 28793986
Alignment:
Q  117 gaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactca 216  Q
    ||||| |||| ||||||| ||||| ||||||||||  |||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||||| ||||||    
T  28794156 gaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactca 28794057  T
Q  217 cagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttta 287  Q
    | ||||||||| ||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  28794056 cggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctcttta 28793986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 26648209 - 26648072
Alignment:
Q  160 gagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagca 259  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||| ||||| ||    
T  26648209 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26648110  T
Q  260 taacctacttctttctccaggctctttaattgattctt 297  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26648109 taacctactttgttctccaggctctttacgtgattctt 26648072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 26754177 - 26754040
Alignment:
Q  160 gagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagca 259  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||| ||||| ||    
T  26754177 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26754078  T
Q  260 taacctacttctttctccaggctctttaattgattctt 297  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26754077 taacctactttgttctccaggctctttacgtgattctt 26754040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 26625007 - 26624864
Alignment:
Q  154 caaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctg 253  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||    
T  26625007 caaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatcttg 26624908  T
Q  254 acagcataacctacttctttctccaggctctttaattgattctt 297  Q
    ||| ||||| ||||||| ||||||||||||||||  ||||||||    
T  26624907 acaccataatctacttcgttctccaggctctttaggtgattctt 26624864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 26730984 - 26730841
Alignment:
Q  154 caaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctg 253  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||    
T  26730984 caaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatcttg 26730885  T
Q  254 acagcataacctacttctttctccaggctctttaattgattctt 297  Q
    ||| ||||| ||||||| ||||||||||||||||  ||||||||    
T  26730884 acaccataatctacttcgttctccaggctctttaggtgattctt 26730841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 26804291 - 26804060
Alignment:
Q  67 aatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaa-tgctagtatcagatgatcatatttagagcaaaaagagcaa 165  Q
    |||||| |||||||| ||||||||||||| | ||| | |||||||| |||||||| ||| | ||||||| ||||| |||||| |||  | ||||  ||||    
T  26804291 aatcaatcacaataacaataagatatagagaaatttatatgtaattaagtgaaaaaaaaatactagtatgagatggtcatatgtagtcctaaaaatgcaa 26804192  T
Q  166 agtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacct 265  Q
    ||||||||  ||||||||||||||| ||| |||| |||||||||||||||||| |||||||| ||| |||| |||||||||| || ||||  ||||||||    
T  26804191 agtcgtatctaaactaaataacaaattgaacataaatatcaatcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacct 26804092  T
Q  266 acttctttctccaggctctttaattgattctt 297  Q
    ||||| || | |||| ||||||  ||||||||    
T  26804091 acttcgtttttcaggatctttaggtgattctt 26804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 26813250 - 26813171
Alignment:
Q  198 tagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctcc 277  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||| |||| |||||||| ||||||    
T  26813250 tagatatcaatcttactcacaatgttttcttttaaaacatgaactatatcatcttgacaccatagcctacttcgttctcc 26813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 26863288 - 26863183
Alignment:
Q  182 aataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggc 281  Q
    ||||||| | || ||||| |||||||||||||||||||||||||||  ||||||  | | ||||||||| ||||| ||||||||||||| ||| || |||    
T  26863288 aataacagattgttcataaatatcaatcttactcacagtgttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggc 26863189  T
Q  282 tcttta 287  Q
    ||||||    
T  26863188 tcttta 26863183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 27529741 - 27529873
Alignment:
Q  154 caaaaagagcaaagtcgtattaaaa-ctaaat--aacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatc 250  Q
    |||||||||||| ||| | |||||| ||||||  |||||| || || |||||||||||||||||||||||||||| | |||||||| |||||||||||      
T  27529741 caaaaagagcaatgtcatgttaaaagctaaatttaacaaattgttcctagatatcaatcttactcacagtgtttttttttaaaacatgaactatatcacg 27529840  T
Q  251 ctgacagcataacctacttctttctccaggctc 283  Q
    || | | || |||||||| | ||||||||||||    
T  27529841 ctcaaaccacaacctactgcgttctccaggctc 27529873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 26885751 - 26885684
Alignment:
Q  230 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 297  Q
    ||||||| ||||||||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||    
T  26885751 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattctt 26885684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 27663671 - 27663783
Alignment:
Q  181 aaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccagg 280  Q
    |||||||||| || ||||||||||||||||||||    ||||||| | |||||||| || |||||||||| ||||  || |||||| | |  ||||||||    
T  27663671 aaataacaaattgttcatagatatcaatcttact----gtgttttgttttaaaacatgagctatatcatcatgacgccacaacctagtgcgctctccagg 27663766  T
Q  281 ctctttaattgattctt 297  Q
    |||||||||||||||||    
T  27663767 ctctttaattgattctt 27663783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 25491785 - 25491887
Alignment:
Q  195 tcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgatt 294  Q
    |||||||||||||||||||| || |||||||||||||||||  |||| ||||||||  |||| || |||||||| | ||||||||| || |||  |||||    
T  25491785 tcatagatatcaatcttacttaccgtgttttctcttaaaacttgaaccatatcatcgggacaccacaacctactacgttctccaggatcattacgtgatt 25491884  T
Q  295 ctt 297  Q
    |||    
T  25491885 ctt 25491887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 27425962 - 27426125
Alignment:
Q  64 atgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagc-aaaaagag 162  Q
    ||||||||||||||||| |||||||||| |||||| |  |  ||||||| | ||||||||| |  |||||||||||| |  |||  | | | ||||||||    
T  27425962 atgaatcaaccacaatacaaataagatagagaaattt--atgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacatatccaaaaagag 27426059  T
Q  163 caaagtcgtattaaaa-ctaaataacaaaatgatcatagatatcaatcttactcacagtgttttct 227  Q
    ||||||| | |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  27426060 caaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 27426125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 26960794 - 26960729
Alignment:
Q  230 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattc 295  Q
    ||||||| |||||||||||||  |||| || |||||||| | || |||||||||||||||||||||    
T  26960794 taaaacatgaactatatcatcacgacaccacaacctactgcgttttccaggctctttaattgattc 26960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 26625058 - 26625026
Alignment:
Q  63 catgaatcaaccacaataaaaataagatataga 95  Q
    |||||||||||||||||||||||||||||||||    
T  26625058 catgaatcaaccacaataaaaataagatataga 26625026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 26731035 - 26731003
Alignment:
Q  63 catgaatcaaccacaataaaaataagatataga 95  Q
    |||||||||||||||||||||||||||||||||    
T  26731035 catgaatcaaccacaataaaaataagatataga 26731003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 26951458 - 26951345
Alignment:
Q  180 taaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccag 279  Q
    ||||||| ||| || ||| ||||||||||||||||    |||||||||  ||||||| |||| ||||||||  || | || |||||||| | ||||||||    
T  26951458 taaataataaattgttcacagatatcaatcttact----gtgttttcttgtaaaacatgaacaatatcatcacgagaccacaacctactgcgttctccag 26951363  T
Q  280 gctctttaattgattctt 297  Q
    | ||| ||||||||||||    
T  26951362 gttctctaattgattctt 26951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 26657643 - 26657576
Alignment:
Q  230 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 297  Q
    ||||||| ||||||| ||||  ||||| ||||||||||| | |||||| ||||||||| |||||||||    
T  26657643 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattctt 26657576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 26763614 - 26763547
Alignment:
Q  230 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 297  Q
    ||||||| ||||||| ||||  ||||| ||||||||||| | |||||| ||||||||| |||||||||    
T  26763614 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattctt 26763547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 25075536 - 25075483
Alignment:
Q  242 tatatcatcctgacagcataacctacttctttctccaggctctttaattgattc 295  Q
    ||||||||| ||| | || |||||||| | ||||||||||||||||||||||||    
T  25075536 tatatcatcgtgataccacaacctactacgttctccaggctctttaattgattc 25075483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 25491606 - 25491634
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  25491606 catttcaattttactagttcccttttaac 25491634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 26804343 - 26804315
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  26804343 catttcaattttactagttcccttttaac 26804315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 26813370 - 26813342
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  26813370 catttcaattttactagttcccttttaac 26813342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 26951622 - 26951594
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  26951622 catttcaattttactagttcccttttaac 26951594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 26960951 - 26960923
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  26960951 catttcaattttactagttcccttttaac 26960923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 26979261 - 26979233
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  26979261 catttcaattttactagttcccttttaac 26979233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 27609426 - 27609454
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  27609426 catttcaattttactagttcccttttaac 27609454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 27663504 - 27663532
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  27663504 catttcaattttactagttcccttttaac 27663532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 27680838 - 27680810
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  27680838 catttcaattttactagttcccttttaac 27680810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 27696895 - 27696923
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  27696895 catttcaattttactagttcccttttaac 27696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 27716805 - 27716833
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  27716805 catttcaattttactagttcccttttaac 27716833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 31286429 - 31286401
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  31286429 catttcaattttactagttcccttttaac 31286401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 64 - 297
Target Start/End: Original strand, 29272185 - 29272418
Alignment:
Q  64 atgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagagc 163  Q
    ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||    
T  29272185 atgaatcaaccacaataaaaataagatgtacaaatattaacatgcaattgagtgaaaataaatgctagtatcagatgataatatttagtccaaaaagagc 29272284  T
Q  164 aaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataac 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  29272285 aaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactagatcatcctggcagcataac 29272384  T
Q  264 ctacttctttctccaggctctttaattgattctt 297  Q
    ||||||||||||||||||||||||||||||||||    
T  29272385 ctacttctttctccaggctctttaattgattctt 29272418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 29272144 - 29272172
Alignment:
Q  21 catttcaattttactagttcccttttaac 49  Q
    |||||||||||||||||||||||||||||    
T  29272144 catttcaattttactagttcccttttaac 29272172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 1957 - 2119
Alignment:
Q  136 agatgatcatatttagag-caaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaa 234  Q
    ||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1957 agatgatcatatttagttacaaaaagagcaaagttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaa 2056  T
Q  235 cacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2057 cacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 63 - 297
Target Start/End: Original strand, 266702 - 266929
Alignment:
Q  63 catgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagcaaaaagag 162  Q
    ||||||||||| ||||||||||||||||||||| | | | |||||||| |       || |||| ||||||| ||||| |||||||| |  |||||||||    
T  266702 catgaatcaacaacaataaaaataagatatagataaacttacatgtaaat-------aataaatactagtatgagatggtcatattttgtccaaaaagag 266794  T
Q  163 caaagtcgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataa 262  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||   |||||||| ||||||||||||| ||||| |||||    
T  266795 caaagtcgtattaaaactaaataacaaattgatcattgatatcaatcttactcacagtgtttttatttaaaacatgaactatatcatcttgacaccataa 266894  T
Q  263 cctacttctttctccaggctctttaattgattctt 297  Q
    |||||||| ||||||||||||||||  ||||||||    
T  266895 cctacttcgttctccaggctctttaggtgattctt 266929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 287
Target Start/End: Complemental strand, 578 - 393
Alignment:
Q  103 acatgtaattgagtg-aaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcataga 201  Q
    |||||||||| |||| |||| |||| ||||||| ||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  578 acatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacataga 479  T
Q  202 tatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttta 287  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  478 tatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctcttta 393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 3088 - 3272
Alignment:
Q  103 acatgtaattgagtg-aaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcataga 201  Q
    |||||||||| |||| |||| |||| ||||||| ||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  3088 acatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacataga 3187  T
Q  202 tatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttt 286  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||| | ||| ||||| |||||||||||||||||||||||    
T  3188 tatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 3272  T

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Target: scaffold0277; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 12051 - 12235
Alignment:
Q  103 acatgtaattgagtg-aaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcataga 201  Q
    |||||||||| |||| |||| |||| ||||||| ||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  12051 acatgtaattaagtggaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacataga 12150  T
Q  202 tatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttt 286  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||| | ||| ||||| |||||||||||||||||||||||    
T  12151 tatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 12235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 103 - 287
Target Start/End: Complemental strand, 9297 - 9111
Alignment:
Q  103 acatgtaattgagtg--aaaagaaatgctagtatcagatgatcatatttagagcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatag 200  Q
    |||||||||| ||||  |||| |||| ||| ||| ||||| ||||||||||  |||||||||||||||| ||| |||||||||||||||| ||| |||||    
T  9297 acatgtaattaagtggaaaaaaaaatactaatatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatag 9198  T
Q  201 atatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctcttta 287  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  9197 atatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctcttta 9111  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 61401 - 61238
Alignment:
Q  64 atgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagc-aaaaagag 162  Q
    ||||||||||||||||| |||||||||| |||||| |  |  ||||||| | ||||||||| |  |||||||||||| |  |||  | | | ||||||||    
T  61401 atgaatcaaccacaatacaaataagatagagaaattt--atgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacatatccaaaaagag 61304  T
Q  163 caaagtcgtattaaaa-ctaaataacaaaatgatcatagatatcaatcttactcacagtgttttct 227  Q
    ||||||| | |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  61303 caaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 61238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 18075593 - 18075430
Alignment:
Q  64 atgaatcaaccacaataaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagagc-aaaaagag 162  Q
    ||||||||||||||||| |||||||||| |||||| |  |  ||||||| | ||||||||| |  |||||||||||| |  |||  | | | ||||||||    
T  18075593 atgaatcaaccacaatacaaataagatagagaaattt--atgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacatatccaaaaagag 18075496  T
Q  163 caaagtcgtattaaaa-ctaaataacaaaatgatcatagatatcaatcttactcacagtgttttct 227  Q
    ||||||| | |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  18075495 caaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 18075430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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