View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_high_4 (Length: 443)
Name: NF1415_high_4
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 40877446 - 40877231
Alignment:
| Q |
18 |
gtagaaagaagtagatgggcgtattcaaggctctaaaatggtatcctatgctctaatgatcgatatcaatagaaagatcacgaagaaaaatgatagtccc |
117 |
Q |
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| T |
40877446 |
gtagaaagaagtagatgggcgtattcaaggctctaaaatggtatcctatgctctaatgatcgatatcaatagaaagatcacgaagaaaaatgatagtccc |
40877347 |
T |
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| Q |
118 |
accacttactataatcgttttatttcaaataaaaaattatacggtacc--nnnnnnnncattacttttattagaaggaggtcaagttaatcagtgtccta |
215 |
Q |
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| T |
40877346 |
accacttactataatcgttttatttcaaataaaaaattataccgtaccaaaaaaaaaacattacttttattaaa---aggtcaagttaatcggtgtccta |
40877250 |
T |
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| Q |
216 |
agaacatttattaagaagc |
234 |
Q |
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| T |
40877249 |
agaacatttattaagaagc |
40877231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 40877172 - 40877032
Alignment:
| Q |
293 |
gattttagatgcattatttctaaaataaagtttctatttaggacttcttatcaaatgtcgccgaggtacttgttagcatttcccatgccaaaatactact |
392 |
Q |
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| T |
40877172 |
gattttagatgcattatttctaaaataaagtttctatttaggacttcttatcaaatgccgccgaggtacttgttagcatttcccatgccaaaatactact |
40877073 |
T |
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| Q |
393 |
atcaaagaataaagatttaattgcagttttcaccccctatg |
433 |
Q |
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| T |
40877072 |
atcaaagaataaagacttaattgcagttttggccccctatg |
40877032 |
T |
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