View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1415_low_1 (Length: 838)
Name: NF1415_low_1
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 766; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 11 - 820
Target Start/End: Complemental strand, 38180711 - 38179902
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180711 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
38180612 |
T |
|
| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180611 |
tacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
38180512 |
T |
|
| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180511 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38180412 |
T |
|
| Q |
311 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38180411 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacagtttttgat |
38180312 |
T |
|
| Q |
411 |
atctactattattactttcatgagcatggtgactacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180311 |
atctactattattactttcatgagcatggtgactacgtcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttg |
38180212 |
T |
|
| Q |
511 |
aaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaa |
610 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38180211 |
aaagccgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctatatgaagaaaccaa |
38180112 |
T |
|
| Q |
611 |
ccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgatt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180111 |
ccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgacgttggtaagatcaaaatgataccaatcggaccattgatt |
38180012 |
T |
|
| Q |
711 |
ccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggatt |
810 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180011 |
ccatatactttcttgggcggtaaagatcctaatgatacttcgtctagtggtggtgttgtcggtgttgaatcagaagataattactttgaatggttggatt |
38179912 |
T |
|
| Q |
811 |
caaaggatga |
820 |
Q |
| |
|
|||||||||| |
|
|
| T |
38179911 |
caaaggatga |
38179902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 11 - 820
Target Start/End: Complemental strand, 38185380 - 38184571
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
38185380 |
catcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc |
38185281 |
T |
|
| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||| |
|
|
| T |
38185280 |
tacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacg |
38185181 |
T |
|
| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
| |
|
||||||| || ||||| || ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185180 |
aagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38185081 |
T |
|
| Q |
311 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185080 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgat |
38184981 |
T |
|
| Q |
411 |
atctactattattactttcatgagcatggtgactacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttg |
510 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184980 |
atctactattattactttcatgaacatggtgactacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttg |
38184881 |
T |
|
| Q |
511 |
aaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaa |
610 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184880 |
aaagccgtgaccttccctcttttttattatcttcaaatatatatactatcgctactcgatctttcaaagaacaaattcaagttctagatgaagaaaccaa |
38184781 |
T |
|
| Q |
611 |
ccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgatt |
710 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184780 |
ccctacagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgatt |
38184681 |
T |
|
| Q |
711 |
ccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggatt |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184680 |
ccatatgctttcttgggcggtaaagatcctaatgatacttcgtctggtggtggtgttgtcgatgttgaatcagaagataattactttgaatggttggatt |
38184581 |
T |
|
| Q |
811 |
caaaggatga |
820 |
Q |
| |
|
|||||||||| |
|
|
| T |
38184580 |
caaaggatga |
38184571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 820
Target Start/End: Complemental strand, 38170897 - 38170088
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38170897 |
catcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc |
38170798 |
T |
|
| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | || ||| |
|
|
| T |
38170797 |
cacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacg |
38170698 |
T |
|
| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
| |
|
||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||||||||||| |
|
|
| T |
38170697 |
aagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttg |
38170598 |
T |
|
| Q |
311 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgat |
410 |
Q |
| |
|
|||| |||| | |||| || | |||| | |||||||||| ||||||||||||||||||| | || || ||||||||||| |||||||| |||||| |
|
|
| T |
38170597 |
cttaatctacactctcatactttcatgggctcccaaggtggcacatgagcttcacctcccatcaacactgttgtggattcaagcagcaacggtgtttgat |
38170498 |
T |
|
| Q |
411 |
atctactattattactttcatgagcatggtgactacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttg |
510 |
Q |
| |
|
|| | |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
38170497 |
atattctattattactttcatgaacacggtgactacatcacaaacaaatcaaaggatgaaacgtgtttaatatcattaccgggattgtcattctctctta |
38170398 |
T |
|
| Q |
511 |
aaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctag-atgaagaaacca |
609 |
Q |
| |
|
|||| || |||||||||||||||||||| ||||||||| ||||||| | ||| || |||| ||||||| ||||||| |||| | | ||||||||| || |
|
|
| T |
38170397 |
aaagccgcgaccttccctcttttttattggcttcaaatacatacacttttgctcttccatctctcaaagagcaaattc-agttgttgaatgaagaaatca |
38170299 |
T |
|
| Q |
610 |
accctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgat |
709 |
Q |
| |
|
|||| | ||||||||| ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38170298 |
acccaagagtacttgtgaacaccgttgaggagtttgaactggatgcactgaataaagttgatgttggtaagatcaaaatgatacccatcggaccgttgat |
38170199 |
T |
|
| Q |
710 |
tccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggat |
809 |
Q |
| |
|
||||| ||||||||||| || || ||||||| |||| || || |||||||| |||||| | ||||| ||| | ||| ||||| || ||||||||||| |
|
|
| T |
38170198 |
tccatctgctttcttggatggcaaggatcctacggataattcgtttggtggtgacgttgtccgtgttgactcaaaggatgattacattcaatggttggat |
38170099 |
T |
|
| Q |
810 |
tcaaaggatga |
820 |
Q |
| |
|
||||||||||| |
|
|
| T |
38170098 |
tcaaaggatga |
38170088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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