View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_10 (Length: 413)
Name: NF1415_low_10
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_10 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 43592277 - 43591892
Alignment:
| Q |
14 |
tattcttctacatgtttatttgtagggtannnnnnn-gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttatt |
112 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43592277 |
tattcttctatatgtttatttgtagggtaatttttttgttcaagtgaccctcatggattgttaacttttatccaccttaagagttatgtaattttttatt |
43592178 |
T |
|
| Q |
113 |
ttgaaataaagaaccaattgcgaaataattttcacaaccattaaattcnnnnnnnnnnn-gcgacaaatcatatttattannnnnnncgtttagaatgat |
211 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||| |
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| T |
43592177 |
ttgaaataaagaaccaattgtgaaataattttcacaaccattaaactcctttttttttttgcgacgaaacatatttattatttttt-cgtttagaatgat |
43592079 |
T |
|
| Q |
212 |
tgaatgcgacttttttgtcgttgttgtgtgtgcatgtcacatatatcaatttttccaatcggagaggatcacacaatttaaaatctgataaacaaatgta |
311 |
Q |
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|||||| ||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
43592078 |
tgaatgtgacttttttgttgctgttgtgcgtgcatgtcacatatatcaaattttccaatcggagaggatcaatccatttaaaatctgataaacaaatgta |
43591979 |
T |
|
| Q |
312 |
aaacaacattaatgatagaatcaacttattgaaattgagaatcagatnnnnnnnttaatgttaaaattggagaatggtaaattattt |
398 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
43591978 |
aaacaacattaatggtagagtcaacttattgaaattgagaatcagataaaaaaattaatgttaaaattggagaatcataaattattt |
43591892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 52335613 - 52335233
Alignment:
| Q |
14 |
tattcttctacatgtttatttgtagggtannnnnnn-gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttatt |
112 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52335613 |
tattcttctacatgtttatttgtagggtaatttttttgttcaagtgaccctcatggattgttaacttttatccatcttaagagttatttaattttttatt |
52335514 |
T |
|
| Q |
113 |
ttgaaataaagaaccaattgcgaaataattttcacaaccattaaattcnnnnnnnnnnngcgacaaatcatatttattannnnnnncgtttagaatgatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||| | |||||| ||||||| |
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| T |
52335513 |
ttgaaataaagaaccaattgcgaaataattttcacaactcttt--ttctttt-------gcgacgaatcatatttat-aattttttcgtttaaaatgatt |
52335424 |
T |
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| Q |
213 |
gaatgcgactttttt----gtcgttgttgtgtgtgcatgtcacatatatcaatttttccaatcggagaggatcacacaatttaaaatctgataaacaaat |
308 |
Q |
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||||| ||||||||| || |||| ||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||| |
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| T |
52335423 |
gaatgtgactttttttgttgtttttgtcgtgtgtgcatgtcacatatatcaatttttcctattggagaggatgacaccatttaaaatctgataaacaaat |
52335324 |
T |
|
| Q |
309 |
gtaaaacaacattaatgatagaatcaacttattgaaattgagaatcagat-nnnnnnnttaatgttaaaattggagaatggtaaattattt |
398 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
52335323 |
gtaaaacaacattaatggtagaatcaacttattgaaattgagaatcaaataaaaaaaattaatgttaaaattggagaatcataaattattt |
52335233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 115629 - 115960
Alignment:
| Q |
14 |
tattcttctacatgtttatttgtagggtannnnnnn--gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttat |
111 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
115629 |
tattcttctacatgtttatttgtggggtaattttttttgttcaagtgaccctcatgaatcgttaacttttatccatcttaagagttatttaattttttat |
115728 |
T |
|
| Q |
112 |
tttgaaataaagaaccaattgcgaaataattttcacaaccattaaattcnnnnnnnnnnngcgacaaatcatatttattannnnnnncgtttagaatgat |
211 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||| |
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| T |
115729 |
tttgaaacaaagaaccaattacgaaataattttcacaaccattaaactc-tttttcttttgcgacgaatcatattta-taattttttcgtttagaatgat |
115826 |
T |
|
| Q |
212 |
tgaatgcgacttttttgtcgttgttgtgtgtgcatgtcacatatatcaatttttccaatcggagaggatcacacaatttaaaatctgataaacaaatgta |
311 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||| ||| | || ||| | ||||||||||||||||||||||| |
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| T |
115827 |
tgaatgtgacttttttgttgttgttgtgtgtgcatgtcacatatatcaaattt------------gtatgtcac-acttaaaatctgataaacaaatgta |
115913 |
T |
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| Q |
312 |
aaacaacattaatgatagaatcaacttattgaaattgagaatcagat |
358 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
115914 |
caacaacattaatgagagaatcaacttactgaaattgagaatcagat |
115960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 28324314 - 28324645
Alignment:
| Q |
14 |
tattcttctacatgtttatttgtagggtannnnnnn--gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttat |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
28324314 |
tattcttctacatgtttatttgtggggtaattttttttgttcaagtgaccctcatgaatcgttaacttttatccatcttaagagttatttaattttttat |
28324413 |
T |
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| Q |
112 |
tttgaaataaagaaccaattgcgaaataattttcacaaccattaaattcnnnnnnnnnnngcgacaaatcatatttattannnnnnncgtttagaatgat |
211 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||| |
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| T |
28324414 |
tttgaaacaaagaaccaattacgaaataattttcacaaccattaaactc-tttttcttttgcgacgaatcatattta-taattttttcgtttagaatgat |
28324511 |
T |
|
| Q |
212 |
tgaatgcgacttttttgtcgttgttgtgtgtgcatgtcacatatatcaatttttccaatcggagaggatcacacaatttaaaatctgataaacaaatgta |
311 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||||||||||||| ||| | || ||| | ||||||||||||||||||||||| |
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| T |
28324512 |
tgaatgtgacttttttgttgttgttgtgtgtgcatgtcacatatatcaaattt------------gtatgtcac-acttaaaatctgataaacaaatgta |
28324598 |
T |
|
| Q |
312 |
aaacaacattaatgatagaatcaacttattgaaattgagaatcagat |
358 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
28324599 |
caacaacattaatgagagaatcaacttactgaaattgagaatcagat |
28324645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 47863434 - 47863529
Alignment:
| Q |
62 |
ctcatggattgttaacttttatccaccttaagagttatttaattttttattttgaaataaagaaccaattgcgaaataattttcacaaccattaaa |
157 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47863434 |
ctcatggattgttaacttttatccacatgaagagttatttaattttttattttgaaataaagaaccaattgcaaaataattttcacaaccattaaa |
47863529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 47863593 - 47863640
Alignment:
| Q |
311 |
aaaacaacattaatgatagaatcaacttattgaaattgagaatcagat |
358 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
47863593 |
aaaaaaacattaatggtagaatcaacttattgaaattgagaatcagat |
47863640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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