View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1415_low_14 (Length: 302)

Name: NF1415_low_14
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1415_low_14
NF1415_low_14
[»] chr8 (19 HSPs)
chr8 (18-292)||(4704996-4705270)
chr8 (18-292)||(4717154-4717426)
chr8 (18-286)||(4738252-4738520)
chr8 (18-282)||(4727740-4728004)
chr8 (18-286)||(4751625-4751893)
chr8 (86-276)||(10448896-10449086)
chr8 (86-252)||(4888425-4888594)
chr8 (21-194)||(4690614-4690787)
chr8 (111-227)||(4682785-4682901)
chr8 (144-247)||(4848089-4848192)
chr8 (84-276)||(4921215-4921407)
chr8 (144-237)||(4802887-4802980)
chr8 (89-241)||(4827726-4827878)
chr8 (196-274)||(4899075-4899153)
chr8 (111-276)||(4774579-4774747)
chr8 (85-194)||(4792814-4792923)
chr8 (89-173)||(4872224-4872308)
chr8 (181-280)||(4911361-4911460)
chr8 (196-237)||(21437845-21437886)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 4705270 - 4704996
Alignment:
Q  18 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4705270 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 4705171  T
Q  118 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4705170 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaagattccgtcttacaaagatcag 4705071  T
Q  218 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaaccatgttcat 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4705070 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaaccatgttcat 4704996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 4717426 - 4717154
Alignment:
Q  18 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 117  Q
    ||||||||||| || | |||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  4717426 taatacactatccaaaatataaacaagaccttatttgaaa-tatgaactcattcctttgtcaactgataagtacctgtttttcttctaaacaaccaaatt 4717328  T
Q  118 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||    
T  4717327 ccaagagaaatcaaaagaattacagctaatgctgataaagatgcaacaagtggtacaacaacgttcttctttttgcaggattccgtcatgcaaagatcag 4717228  T
Q  218 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaaccatgttcat 292  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||  ||| ||||| |||||||||    
T  4717227 gattatcatccacactgaaagaagat-aaggtgctaagatattagctatcatatatttggtgaaatcatgttcat 4717154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 4738520 - 4738252
Alignment:
Q  18 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 117  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||| |||||||||||| | |||  |||||||| |||||||||| || | ||||| |    
T  4738520 taatacgctattcattgtataaacaaggccttatttgagaatatgaattcattcctatgtaatctgtgaagtacctttttgtcttctgaatatccaaaat 4738421  T
Q  118 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcag 217  Q
    |||| |||||| ||||  |||||| ||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| ||| ||||||||||||    
T  4738420 ccaaaagaaataaaaatgattacaactaatgctgaaaacgatgcaaccagtggtacaataatgttcttctttttgcaggattctgtcatacaaagatcag 4738321  T
Q  218 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaaccat 286  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||| || |||||| |||||||||    
T  4738320 gattatcatccacactgcaaaaagataaaggttctaagatattagttataatttcattggtgaaaccat 4738252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 4728004 - 4727740
Alignment:
Q  18 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 117  Q
    ||||||| ||||||||||||||| ||| |||||||| | || ||||||||  |||||||||| |||| |||||||| |||||||||| || | ||||| |    
T  4728004 taatacattattcatagtataaataagaccttatttgagaacatgaactcgatcctatgtcatctgaaaagtacctttttgtcttctgaatatccaaaat 4727905  T
Q  118 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcag 217  Q
    ||||||||||||||||| |||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  4727904 ccaagagaaatcaaaaggattacaactaaagctgagaacgatgcaacaagtggtacaacaatgttcttctttttgcaggattctgtcatacaaagatcag 4727805  T
Q  218 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaa 282  Q
    |||| || ||||||||||||||| |||||||| ||||||||| || ||| ||||||||| |||||    
T  4727804 gattgtcttccacactgaaagaaaataaaggtgctaagatatcagttatcatatcattggtgaaa 4727740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 4751893 - 4751625
Alignment:
Q  18 taatacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaatt 117  Q
    |||||||  ||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||  ||||||| |||||||||| || | ||||| |    
T  4751893 taatacaacattcatagtataaacaaggccttatttgagaatatgaactcgttcctatgtcatctgagtagtacctttttgtcttctgaatatccaaaat 4751794  T
Q  118 ccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcag 217  Q
    |||| |||||||||||| |||||| ||||||||||||| |||||||| ||| ||||   || ||| |||||||| |||||||||||| ||||||||||||    
T  4751793 ccaaaagaaatcaaaaggattacaactaatgctgaaaacgatgcaaccagttgtacagtaaagtttttctttttacaggattccgtcatacaaagatcag 4751694  T
Q  218 gattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctgaaaccat 286  Q
    |||||||||||||||||||||||||||||| | ||||||||||   ||| ||||||||| |||| ||||    
T  4751693 gattatcatccacactgaaagaagataaagatgctaagatattgattatcatatcattggtgaacccat 4751625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 10449086 - 10448896
Alignment:
Q  86 aagtacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttctt 185  Q
    |||||||| ||||||||||| | | ||||| |||||||||||||||||| ||||||  ||||| ||||||  ||| |||||||||||| |||||||||||    
T  10449086 aagtacctttttgtcttctatatatccaaaatccaagagaaatcaaaaggattacaattaatgttgaaaacaatgtaacaagtggtacaacaatgttctt 10448987  T
Q  186 ctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattg 276  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| | ||||| ||| |||||||||    
T  10448986 ctttttgcaggattccgtcgtacaaagttcaggattatcatccacactgaaagaagttaaaggtgctaaaagattagttatcatatcattg 10448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 4888425 - 4888594
Alignment:
Q  86 aagtacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtac-tacaa--tgtt 182  Q
    ||||||||||||||||||| |||| || || ||||||||||||||| || ||||||   ||||||||||| ||||||| |||||||||  ||||  | ||    
T  4888425 aagtacctgtttgtcttctgaacatccgaaatccaagagaaatcaagaggattacaataaatgctgaaaatgatgcaataagtggtacaaacaatttctt 4888524  T
Q  183 cttctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaagataaaggttct 252  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  4888525 cttctttttgcatgattcagtcttacaaagaccaggattatcatccacactgaaagaagtcaaaggttct 4888594  T

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Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 4690787 - 4690614
Alignment:
Q  21 tacactattcatagtataaacaaggccttatttcaaaatatgaactcattcctatgtcaactgataagtacctgtttgtcttctaaacaaccaaattcca 120  Q
    ||||||||||||||||||||||||||| ||||| | ||| | |||||| || |||||   || | |||||||| | |||||||| || | ||||| ||||    
T  4690787 tacactattcatagtataaacaaggccatatttgagaatgtaaactcaatcttatgtactctaagaagtacctttctgtcttctcaatatccaaagtcca 4690688  T
Q  121 agagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgca 194  Q
    ||||||||||| |  |||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  4690687 agagaaatcaagacgattacaactaatgctgaaaatgatgcaacaagtggtacagcaatgttcttctttttgca 4690614  T

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Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 4682901 - 4682785
Alignment:
Q  111 ccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaa 210  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||| |||||    
T  4682901 ccaaaatcctagagaaatcaaaaggattacagctaatgctgaaaacgatgcaacaagtggtacagcaatgttcttctttttgcaagattccgtcatacaa 4682802  T
Q  211 agatcaggattatcatc 227  Q
     ||||| | ||||||||    
T  4682801 ggatcaaggttatcatc 4682785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 4848089 - 4848192
Alignment:
Q  144 taatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaagat 243  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||  ||||| ||||||||||||||||  || ||||||||||| ||||     
T  4848089 taatgctgaaaatgatgcaacaagtggtacaacaatgttcttctttttgcatgaacccgtcatacaaagatcaggatttccagccacactgaaaaaagac 4848188  T
Q  244 aaag 247  Q
    ||||    
T  4848189 aaag 4848192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 4921215 - 4921407
Alignment:
Q  84 ataagtacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttc 183  Q
    |||||||||| | |||||||| || | ||||| ||||||||||||||| || || |||  |||||| ||||| ||||||| |||||||||    |  ||     
T  4921215 ataagtacctttctgtcttctgaatatccaaaatccaagagaaatcaataggataacaattaatgcagaaaatgatgcaataagtggtacagttaaattt 4921314  T
Q  184 ttctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattg 276  Q
    |||||| |||| | | ||||| |||||||||||||||||||||| |||||||||||||  |||||| || ||||||||  ||| |||||||||    
T  4921315 ttctttctgcatggtgccgtcatacaaagatcaggattatcatctacactgaaagaagtcaaaggtgcttagatattatttatcatatcattg 4921407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 4802887 - 4802980
Alignment:
Q  144 taatgctgaaaaagatgcaacaagtggtactacaatgttcttctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaa 237  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||  ||||| ||||||||||| ||||  || |||||||||||    
T  4802887 taatgctgaaaatgatgcaacaagtggtacaacaatgttcttctttttgcacgaacccgtcatacaaagatcatgattgccagccacactgaaa 4802980  T

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Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 241
Target Start/End: Original strand, 4827726 - 4827878
Alignment:
Q  89 tacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttcttctt 188  Q
    ||||| |||||||||| ||   ||||| | ||||||| ||||| || |||||| ||||| ||||||  ||| ||| || |||||| ||||||||||| ||    
T  4827726 tacctttttgtcttctgaatctccaaaatgcaagagagatcaagaggattacaactaatcctgaaagtgatccaataattggtacaacaatgttcttatt 4827825  T
Q  189 tttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaag 241  Q
    |||||| ||  || |  |||||||||| ||||| |||||||||||||||||||    
T  4827826 tttgcatgagccctttatacaaagatcgggattgtcatccacactgaaagaag 4827878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 4899075 - 4899153
Alignment:
Q  196 gattccgtcttacaaagatcaggattatcatccacactgaaagaagataaaggttctaagatattagctattatatcat 274  Q
    ||||||||| |||||||||||||||||||||| ||||||||| | |  |||||| |||| ||||||| ||| |||||||    
T  4899075 gattccgtcatacaaagatcaggattatcatctacactgaaaaatgtcaaaggtgctaaaatattagttatcatatcat 4899153  T

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Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 4774579 - 4774747
Alignment:
Q  111 ccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtacta-caa--tgttcttctttttgcaggattccgtctta 207  Q
    ||||| ||||||||||||||| |  ||||||   | ||||||||| ||||| | ||||||||| | |||  | ||||||||| |||| |||||| | |||    
T  4774579 ccaaaatccaagagaaatcaagacgattacaatcattgctgaaaacgatgctataagtggtacaaacaaattcttcttctttctgcatgattccttttta 4774678  T
Q  208 caaagatcaggattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattg 276  Q
    |||||  | ||||||||||| |||||||||||||  |||||| || || |||||| ||| |||||||||    
T  4774679 caaaggccgggattatcatctacactgaaagaagtcaaaggtgcttaggtattagttatcatatcattg 4774747  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 4792814 - 4792923
Alignment:
Q  85 taagtacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtactacaatgttct 184  Q
    ||||||||| |||||||| | || | ||||| ||| ||||| ||||| |  |||| |  |||||||||||  |||||||||| |||||| ||||||||||    
T  4792814 taagtacctatttgtcttttgaatatccaaaatccgagagagatcaatatgattataattaatgctgaaagtgatgcaacaattggtacaacaatgttct 4792913  T
Q  185 tctttttgca 194  Q
    ||||||||||    
T  4792914 tctttttgca 4792923  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 4872224 - 4872308
Alignment:
Q  89 tacctgtttgtcttctaaacaaccaaattccaagagaaatcaaaagaattacagctaatgctgaaaaagatgcaacaagtggtac 173  Q
    ||||| |||||||||| || | ||||| |||||||||||||||||| ||| ||  ||||| |||||| ||||||| |||||||||    
T  4872224 tacctttttgtcttctgaatatccaaaatccaagagaaatcaaaaggattgcaattaatgttgaaaatgatgcaataagtggtac 4872308  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 4911361 - 4911460
Alignment:
Q  181 ttcttctttttgcaggattccgtcttacaaagatcaggattatcatccacactgaaagaagataaaggttctaagatattagctattatatcattgctga 280  Q
    |||||| || ||||||||| |||| |||||||||||||||||||||| || |||||| |||| |    | |||| ||||||| ||| |||||||||||||    
T  4911361 ttcttcattctgcaggatttcgtcatacaaagatcaggattatcatctaccctgaaacaagacatttatgctaaaatattaggtatcatatcattgctga 4911460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 21437845 - 21437886
Alignment:
Q  196 gattccgtcttacaaagatcaggattatcatccacactgaaa 237  Q
    |||| |||| |||||||||||||||||||||| |||||||||    
T  21437845 gatttcgtcatacaaagatcaggattatcatctacactgaaa 21437886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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