View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_17 (Length: 247)
Name: NF1415_low_17
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20493796 - 20494039
Alignment:
| Q |
1 |
ctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgc |
100 |
Q |
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| T |
20493796 |
ctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgc |
20493895 |
T |
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| Q |
101 |
tacttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagattttgtaacttttgtttttattgtgtagaactatgttcttga |
200 |
Q |
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| T |
20493896 |
tacttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagcttatgtaacttttgtttttattgtgtagaactatgttcttga |
20493995 |
T |
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| Q |
201 |
acaatttaaacatttaataagtgaaataagttacctttgcttct |
244 |
Q |
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| T |
20493996 |
acaatttaaacatttaataagtgaaataagttacctttgcttct |
20494039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 20476069 - 20476103
Alignment:
| Q |
80 |
agttgtgtttgttgatgctgctacttatgaagctg |
114 |
Q |
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| T |
20476069 |
agttgtgtttgttgatgctgcttcttatgaagctg |
20476103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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