View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1415_low_19 (Length: 244)

Name: NF1415_low_19
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1415_low_19
NF1415_low_19
[»] scaffold0145 (1 HSPs)
scaffold0145 (6-237)||(12552-12783)
[»] chr4 (4 HSPs)
chr4 (6-237)||(16284934-16285165)
chr4 (6-163)||(18231449-18231604)
chr4 (7-163)||(11555916-11556070)
chr4 (20-133)||(11098355-11098468)
[»] chr6 (4 HSPs)
chr6 (6-237)||(10641218-10641449)
chr6 (6-237)||(14970060-14970293)
chr6 (6-161)||(10906699-10906854)
chr6 (47-163)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (7-163)||(22614701-22614857)
chr7 (6-163)||(11655474-11655631)
chr7 (6-236)||(20025970-20026200)
chr7 (20-121)||(13477489-13477596)
chr7 (62-234)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (6-237)||(24831924-24832161)
chr5 (22-157)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (6-237)||(14481524-14481761)
chr3 (72-222)||(17790941-17791091)
chr3 (72-222)||(19099381-19099531)
chr3 (96-156)||(22159871-22159931)
chr3 (96-156)||(21975275-21975335)
chr3 (96-156)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (19-234)||(44586360-44586574)
chr2 (130-237)||(24786268-24786375)
chr2 (72-157)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (6-163)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (44-157)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 12552 - 12783
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12552 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 12651  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12652 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 12751  T
Q  206 acatccatttattttattttagtattcatctc 237  Q
    ||||||||||||||||||||||||||||||||    
T  12752 acatccatttattttattttagtattcatctc 12783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 16285165 - 16284934
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16285165 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 16285066  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16285065 atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 16284966  T
Q  206 acatccatttattttattttagtattcatctc 237  Q
    ||||||||||||||||||||||||||||||||    
T  16284965 acatccatttattttattttagtattcatctc 16284934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  18231604 gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt 18231505  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 163  Q
    | || ||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  18231504 acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
Q  7 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 106  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  11555916 acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga 11556015  T
Q  107 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 163  Q
     || ||| ||| ||  |||||||||||| ||||| ||  ||||||||||||||||||    
T  11556016 cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  20 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 119  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  120 ccccatcattactc 133  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 10641449 - 10641218
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||     
T  10641449 gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc 10641350  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 205  Q
    | |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || |    
T  10641349 acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca 10641250  T
Q  206 acatccatttattttattttagtattcatctc 237  Q
    ||||||||||| ||||||||| ||||||||||    
T  10641249 acatccatttactttattttattattcatctc 10641218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 14970060 - 14970293
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg 103  Q
    |||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| ||    
T  14970060 gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg 14970159  T
Q  104 ttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc 203  Q
    | | |||| ||||||||| |||||||||||| ||||||||  |||||||||||| |||||   || ||| ||||||| ||||| |||||||||||||       
T  14970160 tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat 14970259  T
Q  204 taacatccatttattttattttagtattcatctc 237  Q
     ||||| | |||||||||||||| ||||| ||||    
T  14970260 caacattcctttattttattttattattcttctc 14970293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||| |||| || | || | || ||||||| |||||||||  |  | | |||||||||     
T  10906854 gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc 10906755  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccacctta 161  Q
      |||||||||| ||| | |||||||||||| ||| ||| ||||||||||||||||    
T  10906754 gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  47 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 146  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  147 tatatcaccaccttatc 163  Q
    |||||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
Q  7 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 106  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  22614857 acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca 22614758  T
Q  107 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 163  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  22614757 tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | |||||||||     
T  11655474 gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc 11655573  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 163  Q
    | || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  11655574 acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 20025970 - 20026200
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||||||||| ||||  ||||||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| |||     
T  20025970 gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc 20026069  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 205  Q
    |||||| ||||||||| | |||||| ||| ||||||  | ||||||||| ||||||||   || ||| || |||||||||||||||||||||  | |  |    
T  20026070 atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca 20026169  T
Q  206 acatccatttattttattttagtattcatct 236  Q
    |||||| |||||| ||||||| |||||||||    
T  20026170 acatccctttattctattttattattcatct 20026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
Q  20 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat 113  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||      |||||||||| ||||||| ||||| ||||| ||||||    
T  13477596 catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat 13477497  T
Q  114 aggactcc 121  Q
    ||||||||    
T  13477496 aggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  62 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta 161  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  162 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 234  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 24832161 - 24831924
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc 99  Q
    |||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||      ||||||||| || |||| ||||    
T  24832161 gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc 24832062  T
Q  100 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 199  Q
    | ||| | | |||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||   || ||| || || ||||||||||||||||||||    
T  24832061 tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct 24831962  T
Q  200 atgctaacatccatttattttattttagtattcatctc 237  Q
    | || ||||||| |||||||||||||| ||||||||||    
T  24831961 acgccaacatccctttattttattttattattcatctc 24831924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 13935715 - 13935849
Alignment:
Q  22 tcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcc 121  Q
    |||||||||||||| ||  |||| |||||| |||||| | |||  |||||||| ||||| ||| | | ||||| ||||| ||| |  ||||||||| |||    
T  13935715 tcattattataatataacatcattatttcc-atcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcc 13935813  T
Q  122 ccatcattactctttatcatccgcttatatcaccac 157  Q
      ||||||||||| ||||| ||| ||||||||||||    
T  13935814 taatcattactctctatcaaccgtttatatcaccac 13935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 14481761 - 14481524
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc 99  Q
    |||||| |||| ||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||||      |||||| || |||| ||||    
T  14481761 gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc 14481662  T
Q  100 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 199  Q
    | ||| | |||||||||||||| |||||||||||| ||||||||||||| |||||||   ||||   || ||| ||||| ||||||||||||||||||||    
T  14481661 tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct 14481562  T
Q  200 atgctaacatccatttattttattttagtattcatctc 237  Q
    | || ||||||| |||||||||||||| ||||||||||    
T  14481561 acgccaacatccctttattttattttattattcatctc 14481524  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 17790941 - 17791091
Alignment:
Q  72 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 171  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  172 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 222  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttat 17791091  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 19099381 - 19099531
Alignment:
Q  72 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 171  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  172 attccacaccttacgcgtgactcattctatgctaacatccatttattttat 222  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttat 19099531  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  96 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 156  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| |||||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
Q  96 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 156  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21975275 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21975335  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
Q  96 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 156  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21997706 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21997766  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
Q  19 tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac 118  Q
    |||| |||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||     
T  44586574 tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat 44586477  T
Q  119 tccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat 217  Q
    ||| |||||||||||| ||||| ||| ||||||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | |||    
T  44586476 tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat 44586377  T
Q  218 tttattttagtattcat 234  Q
    ||||||| | |||||||    
T  44586376 tttatttcattattcat 44586360  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 24786268 - 24786375
Alignment:
Q  130 actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta 229  Q
    ||||| |||||| || |||||||  |||||| || | || ||| || | |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||    
T  24786268 actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta 24786367  T
Q  230 ttcatctc 237  Q
    ||||||||    
T  24786368 ttcatctc 24786375  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
Q  72 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 157  Q
    ||||||||||||||| || ||   || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||    
T  16862347 atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac 16862432  T

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Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 1389 - 1545
Alignment:
Q  6 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 105  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| |     
T  1389 gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc 1487  T
Q  106 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 163  Q
    |  ||||||||||||| ||| | |||||| |||||||||| ||| ||| ||| |||||    
T  1488 acggttataggactcctcataaatactctatatcatccgcatatgtcatcacattatc 1545  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  44 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 143  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  144 gcttatatcaccac 157  Q
    | ||||||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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