View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_20 (Length: 238)
Name: NF1415_low_20
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20493514 - 20493294
Alignment:
| Q |
1 |
ctacgatcttgtaggacggtaaccggacactttaaatcaccggttcttcctaatcttactcctcctcctccggggccacgaagtgctggtaaaatgtagt |
100 |
Q |
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| T |
20493514 |
ctacgatcttgtaggacggtaaccggacactttaaatcaccggttcttcctaatcttactcctcctcctccggggccacgaagtgctggtaaaatgtagt |
20493415 |
T |
|
| Q |
101 |
attgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaacatcatttgaggtagctagtgaaagattggtgatgaaaacaaagatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20493414 |
attgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaacatcatttgaggtagctagtgaaagattggtgatgaaaacaaagatgaa |
20493315 |
T |
|
| Q |
201 |
gaaggaaagggttagtgataa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20493314 |
gaaggaaagggttagtgataa |
20493294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 20475621 - 20475476
Alignment:
| Q |
79 |
cgaagtgctggtaaaatgtagtattgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaa---catcatttgaggtagctagtgaaa |
175 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
20475621 |
cgaattgctggtaaaatgtagtatttgccacctggaaaaatggggttaccatttatgtctaatacttgttcaacagcatcatttgagaaagctagtgaaa |
20475522 |
T |
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| Q |
176 |
gattggtgatgaaaacaaagatgaagaaggaaagggttagtgataa |
221 |
Q |
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| T |
20475521 |
gattggtagtgaaaacaaacaggaggaaggaaagggtgagtgataa |
20475476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 6869728 - 6869852
Alignment:
| Q |
91 |
aaaatgtagtattgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaacatcatttgaggtagctagtgaaagattggtgatgaaaa |
190 |
Q |
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||||||||||||| ||| ||||| | |||||||||||||||| |||| |||||||||| ||||||| ||| ||||| ||||||| ||||||||||| |
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| T |
6869728 |
aaaatgtagtattcaccgcctgggacaatggggttaccatttgtgtccaatacttgct---catcattagagaaagctaatgaaagagtggtgatgaaag |
6869824 |
T |
|
| Q |
191 |
caaagatgaagaaggaaagggttagtga |
218 |
Q |
| |
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|||| || | |||||||||||| ||||| |
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| T |
6869825 |
caaatataaggaaggaaagggtgagtga |
6869852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 6285486 - 6285379
Alignment:
| Q |
84 |
tgctggtaaaatgtagtattgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaacatcatttgaggtagctagtgaaagattggtg |
183 |
Q |
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|||||| ||||||||||||| ||||||||| | || ||||||| |||| |||| |||||||| | ||||||||||| |||| ||||||||||||| |
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| T |
6285486 |
tgctggaaaaatgtagtattcaccacctgggataacagggttactatttgtgtccaatacttgtt---catcatttgagaaagctgatgaaagattggtg |
6285390 |
T |
|
| Q |
184 |
atgaaaacaaa |
194 |
Q |
| |
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|||||| |||| |
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| T |
6285389 |
atgaaagcaaa |
6285379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 20517374 - 20517317
Alignment:
| Q |
154 |
tcatttgaggtagctagtgaaagattggtgatgaaaacaaagatgaagaaggaaaggg |
211 |
Q |
| |
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||||||||| | ||||||||||||| |||||||||||||||| || ||||||||||| |
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|
| T |
20517374 |
tcatttgagaaaactagtgaaagatttgtgatgaaaacaaagaggaggaaggaaaggg |
20517317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 24566553 - 24566488
Alignment:
| Q |
86 |
ctggtaaaatgtagtattgaccacctggaaaaatggggttaccatttatgtctaatacttgctcaa |
151 |
Q |
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||||||||||||||||||| ||||| || || |||| | ||||||||||| ||||||||||||| |
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| T |
24566553 |
ctggtaaaatgtagtattggccaccaggggtaaggggggtgccatttatgtccaatacttgctcaa |
24566488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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