View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_21 (Length: 234)
Name: NF1415_low_21
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2828792 - 2828573
Alignment:
| Q |
1 |
ataagttagtacttccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaaccaa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2828792 |
ataagttagtacctccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaaccaa |
2828693 |
T |
|
| Q |
101 |
ctacgaatatgttatatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttttagactacatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2828692 |
ctacgaatatgttatatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttttagactacatcta |
2828593 |
T |
|
| Q |
201 |
ttctctacctatggagcaca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2828592 |
ttctctacctatggagcaca |
2828573 |
T |
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