View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1415_low_23 (Length: 219)
Name: NF1415_low_23
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_23 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold1254 (1 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 29274318 - 29274102
Alignment:
| Q |
1 |
tgatagagagttgttaaaattggcttcttttttattatattttaatagactcgacacaagtcacacttaggagaaaaggtaacgaagttcacacttgcaa |
100 |
Q |
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| T |
29274318 |
tgatagagagttgttaaaattggcttcttttttattatattttaacagacttcacacaagtcacacggaggagaaaaggtaacgaagttcacacttgcaa |
29274219 |
T |
|
| Q |
101 |
tttttatatatactgaggccaacaataacatacacctactcatccatattctttattctcaaacaatcctcctatcttccattaatttcttctcaattct |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
29274218 |
tttatatatatactgaggccaacaataacatacacctactcatccatattctatattctcaaacaatcct-ctatcttccattaatttcttctcaa-tct |
29274121 |
T |
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| Q |
201 |
catggctatgcaatcacct |
219 |
Q |
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||||||||||||||||||| |
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| T |
29274120 |
catggctatgcaatcacct |
29274102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 268911 - 268676
Alignment:
| Q |
5 |
agagagttgttaaaattggcttcttttttattatattttaatagactcgacacaagtcacacttaggagaaaaggtaacgaagttcacac-ttgcaattt |
103 |
Q |
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||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||| |
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| T |
268911 |
agagagttgttaaaattggttt-ttttttattatattttaacagactcgacacaagtcacacggaggcgaaaaggtaacgaagttcatagattgcaattt |
268813 |
T |
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| Q |
104 |
ttatatatactg---------------------aggccaacaataacatacacctactcatccatattctttattctcaaacaatcctcctatcttccat |
182 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
268812 |
ttatatatactgttacatagttttatattacagaggccaacaatagtatacacctactcatccatattctatattctcaaacaatcctcctatcttccat |
268713 |
T |
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| Q |
183 |
taatttcttctcaattctcatggctatgcaatcacct |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
268712 |
taatttcttctcagttctcatggctatgcaatcacct |
268676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 26646116 - 26646324
Alignment:
| Q |
6 |
gagagttgttaaaattggcttctttttta-ttatattttaatagactcgacacaagtcacacttaggagaaaa-ggtaacgaagttcacacttgcaattt |
103 |
Q |
| |
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||||||||||||||||||||| || |||| ||||||||||| ||||| |||||||| ||| | ||||||||| ||||| |||||| | || | | |
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| T |
26646116 |
gagagttgttaaaattggcttgttatttagttatattttaacagactggacacaagccacgcggaggagaaaatggtaagaaagttct-attt---agtg |
26646211 |
T |
|
| Q |
104 |
ttatatatactgaggccaacaataacatacacctactcatccatattctttattctcaaacaat--cctcctatcttccattaatttcttctcaattctc |
201 |
Q |
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|||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
26646212 |
ttatat-tacagaggccaacaataacatacaccaactcatccatattctgtattcttaaacaatatcctcctatcttccattaatttcctttcaattctc |
26646310 |
T |
|
| Q |
202 |
atggctatgcaatc |
215 |
Q |
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|||||||||||||| |
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| T |
26646311 |
atggctatgcaatc |
26646324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 26752084 - 26752292
Alignment:
| Q |
6 |
gagagttgttaaaattggcttctttttta-ttatattttaatagactcgacacaagtcacacttaggagaaaa-ggtaacgaagttcacacttgcaattt |
103 |
Q |
| |
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||||||||||||||||||||| || |||| ||||||||||| ||||| |||||||| ||| | ||||||||| ||||| |||||| | || | | |
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| T |
26752084 |
gagagttgttaaaattggcttgttatttagttatattttaacagactggacacaagccacgcggaggagaaaatggtaagaaagttct-attt---agtg |
26752179 |
T |
|
| Q |
104 |
ttatatatactgaggccaacaataacatacacctactcatccatattctttattctcaaacaat--cctcctatcttccattaatttcttctcaattctc |
201 |
Q |
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|||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
26752180 |
ttatat-tacagaggccaacaataacatacaccaactcatccatattctgtattcttaaacaatatcctcctatcttccattaatttcctttcaattctc |
26752278 |
T |
|
| Q |
202 |
atggctatgcaatc |
215 |
Q |
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|||||||||||||| |
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| T |
26752279 |
atggctatgcaatc |
26752292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 18724433 - 18724404
Alignment:
| Q |
190 |
ttctcaattctcatggctatgcaatcacct |
219 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
18724433 |
ttctcaattctcatggctatgcaatcacct |
18724404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 18699747 - 18699719
Alignment:
| Q |
191 |
tctcaattctcatggctatgcaatcacct |
219 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
18699747 |
tctcaattctcatggctatgcaatcacct |
18699719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1254 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1254
Description:
Target: scaffold1254; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 277 - 249
Alignment:
| Q |
191 |
tctcaattctcatggctatgcaatcacct |
219 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
277 |
tctcaattctcatggctatgcaatcacct |
249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 7352 - 7380
Alignment:
| Q |
191 |
tctcaattctcatggctatgcaatcacct |
219 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7352 |
tctcaattctcatggctatgcaatcacct |
7380 |
T |
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