View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1415_low_3 (Length: 580)
Name: NF1415_low_3
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 94 - 434
Target Start/End: Original strand, 52077230 - 52077572
Alignment:
| Q |
94 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
52077230 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaattgattttaattattatatgacccttgtaaattaaataaaggac |
52077329 |
T |
|
| Q |
192 |
gatgaaagaggacactattgatgattctgtgctcgacagagagaaggaagggaagaagcagaaaggaaacgacgatagtgagtgataagagaaattatat |
291 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077330 |
gatgaaagaggacgctattgatgattctgtgctcgacagagagaaggaagggaagaagcagaaaggaaacgacgatagtgagtgataagagaaattatat |
52077429 |
T |
|
| Q |
292 |
actgtttgttgacagagaaaacatgaattggttttgtgaaagggatgtagatcgatgaacaatagttaataacagccagaattaataataatatttttta |
391 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077430 |
actgtttgttgagagagaaaacatgaattggttttgtgaaagggttgtagatcgatgaacaatagttaataacagccagaattaataataatatttttta |
52077529 |
T |
|
| Q |
392 |
tgggttaatcgtaaatacaaatcttgtttctaaaaggaaccag |
434 |
Q |
| |
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| T |
52077530 |
tgggttaatcgtaaatacaaatcttgtttctaaaaggaaccag |
52077572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 94 - 433
Target Start/End: Original strand, 3615945 - 3616287
Alignment:
| Q |
94 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3615945 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttctaaattaaataaaggac |
3616044 |
T |
|
| Q |
192 |
gatgaaagaggacactattgatgattctgtgctcgacagagagaaggaagggaagaagcagaaaggaaacgacgatagtgagtgataagagaaattatat |
291 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |
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| T |
3616045 |
gatgaaagaggatgctattgatgattctgtgctcgacagagagaaggaagggaagaagcagaaaggaaacggcgacagtgagtgataagagaaattatgt |
3616144 |
T |
|
| Q |
292 |
actgtttgttgacagagaaaacatgaattgg-ttttgtgaaagggatgtagatcgatgaacaatagttaataacagccagaattaataataatatttttt |
390 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3616145 |
actgtttgttgagagagaaaacatgaattggtttttgtgaaagggttgtagatcgatgaacaatagttaataacaaccagaattaataataatatttttt |
3616244 |
T |
|
| Q |
391 |
atgggttaatcgtaaatacaaatcttgtttctaaaaggaacca |
433 |
Q |
| |
|
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|
| T |
3616245 |
atgggttaattgtaaatactaatcttgtttctaaaaggaacca |
3616287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 52077624 - 52077674
Alignment:
| Q |
500 |
cagtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaattt |
550 |
Q |
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|
| T |
52077624 |
cagtgatggtggtgtagggatgaatttatgatggtggtgtgtgatgaattt |
52077674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 558
Target Start/End: Original strand, 12666941 - 12666996
Alignment:
| Q |
502 |
gtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaatttatgaattt |
558 |
Q |
| |
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| T |
12666941 |
gtgatggtggtgtagtgatgaatttatgatggtggtgtgtgatg-atttatgaattt |
12666996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 3616352 - 3616402
Alignment:
| Q |
500 |
cagtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaattt |
550 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
3616352 |
cagtgatggtggtgtatggatgaatttatgatggcggtgtctgatgaattt |
3616402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 94 - 433
Target Start/End: Complemental strand, 16756908 - 16756567
Alignment:
| Q |
94 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacata--agggataatggattttaaacattatatgacccttgtaaattaaataaaggac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16756908 |
tcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttgtaaattaaataaaggac |
16756809 |
T |
|
| Q |
192 |
gatgaaagaggacactattgatgattctgtgctcgacagagagaaggaagggaagaagcagaaaggaaacgacgatagtgagtgataagagaaattatat |
291 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16756808 |
gatgaaagaggatgttattgatgattttgtgctcgacagagagaaggaagggaagaagcaggaaggaaacaacgatagtgagtgataagagaaattatat |
16756709 |
T |
|
| Q |
292 |
actgtttgttgacagagaaaacatgaattggttttgtgaaagggatgtagatcgatgaacaatagttaataacagccagaattaataataatatttttta |
391 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
16756708 |
actgtttgttgagagagaaaacatgaattggttttgtgaaagggttgtagatcgatgaacaatagttaataacaaccaaaattaataataatatttttta |
16756609 |
T |
|
| Q |
392 |
tgggttaatcgtaaatacaaatcttgtttctaaaaggaacca |
433 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
16756608 |
tgggttaatcgtaaatacaaatcttgattctaaaaggaacca |
16756567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 16756516 - 16756472
Alignment:
| Q |
519 |
atgaatttatgatggtggtgtgtgatgaatttatgaatttgggag |
563 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16756516 |
atgaatttatgatggtggtgtgtgatgaatttatgaatttgggag |
16756472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 7309553 - 7309443
Alignment:
| Q |
223 |
ctcgacagagagaaggaagggaagaagcagaaaggaaacgacgatagtgagtgataagagaaattatatactgtttgttgacagagaaaacatgaattgg |
322 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||| || ||| ||| |||||||||||||||||| ||||||| |||||||||||||| | | |
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| T |
7309553 |
ctcgacagagagaaggaaaagaagaagctgaaaggaaacggtgagagttggtggtaagagaaattatatactttttgttg--agagaaaacatgaacttg |
7309456 |
T |
|
| Q |
323 |
ttttgtgaaaggg |
335 |
Q |
| |
|
||||||||||||| |
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|
| T |
7309455 |
ttttgtgaaaggg |
7309443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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