View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_4 (Length: 473)
Name: NF1415_low_4
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 52592224 - 52592684
Alignment:
| Q |
13 |
attatactggtattgaaatggagggacagatgcattggaaggcagtagtgtcccgagcctaagagataactcttggcattgtatactttgctcatctaca |
112 |
Q |
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| T |
52592224 |
attatactggtattgaaatggagggacagatacattggaaggcagtagtgtcccgagcctaagagataactcttggcattgtatactttgctcatctaca |
52592323 |
T |
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| Q |
113 |
tgagagttgtaagcattggaatgctcatcaatggattgcatagtcactgtgtcgcctataggcgtgttaaacttgattccattttgttctgctacagatt |
212 |
Q |
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| T |
52592324 |
tgagagttgtaagcattggaatgctcatcaatggattgcatagtcactgtgtcgcctataggcatgttaaacttgattccattttgttctgctacagatt |
52592423 |
T |
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| Q |
213 |
cattgtagtaattgtaaggtaacaaaggactcgaggtgaacatatccatataggaccctgaagagaatgcttggttgggatacattctaagttacaagac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592424 |
cattgtagtaattgtaaggtaacaaaggactcgaggtgaacatatccatataggaccctgaagagaatgcttggttgggatacattctaagttacaagac |
52592523 |
T |
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| Q |
313 |
aagatcagcacttgttgggaacaagaacctcacttctggtctcttcacaacaatgaaatcagcttgatatctttttcaatgggaaacaattgtcttggcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592524 |
aagatcagcacttgttgggaacaagaacctcacttctggtctcttcacaacaatgaaatcagcttgatatctttttcaatgggaaacaattgtcttggcg |
52592623 |
T |
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| Q |
413 |
atgattatgcaatatttcatcttctattctgataacaatgaatttcaatcaaaagcacatt |
473 |
Q |
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| T |
52592624 |
atgattatgcaatatttcatcttctattctgataacaatgaatttcaatcaaaagcacatt |
52592684 |
T |
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