View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_5 (Length: 467)
Name: NF1415_low_5
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_5 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 251 - 467
Target Start/End: Complemental strand, 34695344 - 34695128
Alignment:
| Q |
251 |
gttttcaaatattcatctttaattgaaattatttaccacttaagttcaatcactttataaaaatgaatatttattaccttgaaattgatcaccagtaaag |
350 |
Q |
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| T |
34695344 |
gttttcaaatattcatctttaattgaaattatttaccacttaagttcaatcactttataaaaattaatatttattaccttgaaattgatcaccagtaaag |
34695245 |
T |
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| Q |
351 |
aggaatggaatatcagcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaa |
450 |
Q |
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| T |
34695244 |
aggaatggaatatcagcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaa |
34695145 |
T |
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| Q |
451 |
aattaagttgtgggtct |
467 |
Q |
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| T |
34695144 |
aattaagttgtgggtct |
34695128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 34697312 - 34697071
Alignment:
| Q |
13 |
catcaaccaaatgaagccatgaacattgcacacgtccatgagatattatagaacataaccataccccgtgcgt-acattctgggtgtgcgcacacgcgcc |
111 |
Q |
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| T |
34697312 |
catcaaccaaatgaagccatgaacattgcacacgtccatgagatattatagaacataaccataccccgtgctttaaattctgggtgtgcgcacgggcgcc |
34697213 |
T |
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| Q |
112 |
cacacaaacacatgtaaatattgatatatattatgtccaaaccttctgttttttaagaagggactatagggaatttagagtttgacacataagtaaagtt |
211 |
Q |
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| T |
34697212 |
cacacaaacacatgtaaatattgatatatattttgtccaaaccttctgttttttaagaagggactataggtaatttagagtttgacacataagtaaagtt |
34697113 |
T |
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| Q |
212 |
tgatnnnnnnnttgttcaaactaggatttaaatcagtttgtt |
253 |
Q |
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| T |
34697112 |
tgataaaaaaattgttaaaactaggatttaaatcagtttgtt |
34697071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 325 - 467
Target Start/End: Complemental strand, 34687341 - 34687202
Alignment:
| Q |
325 |
taccttgaaattgatcaccagtaaagaggaatggaatatcagcaggtgcactcatgtcaatggccggagggagaggagcaagatcagttgaatgatcatc |
424 |
Q |
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| T |
34687341 |
taccttgaagttgatcaccggtaaaaaggaatggaacatcaacaggtgcactcatgtcaatggccggaggtagaggagcaagatcagttga---atcatc |
34687245 |
T |
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| Q |
425 |
attacttgaagctgtcgtgacaccaaaattaagttgtgggtct |
467 |
Q |
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| T |
34687244 |
attacttgaagttgtcgtgacaccaaaattaaattgtgggtct |
34687202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 8285179 - 8285102
Alignment:
| Q |
390 |
ggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtct |
467 |
Q |
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| T |
8285179 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtct |
8285102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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