View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_7 (Length: 442)
Name: NF1415_low_7
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 43394412 - 43394012
Alignment:
| Q |
1 |
gatgctattactgatggaagttctgggaagtgggttttgtctggaaatggtggatctgaagtggggttgtgtaaagatggaaacttgttctctcctaaag |
100 |
Q |
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| T |
43394412 |
gatgctattactgatggtggttctgggaagtgggttttgtctggaaatggtggatctgaagtggggttgtgtaaagatggaaacttgttctctcctaaag |
43394313 |
T |
|
| Q |
101 |
ctaaaggtgttggtgaatgtaataaccaacaaaaccctttctctgcttcagttgttgttaaagaaactgttacacactctccaaagcctttgcatgataa |
200 |
Q |
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| T |
43394312 |
ctaaaggtgttggtgaatgtaataaccaacaaaaccctttctctgcttcagttgttgttaaagaaactgttacacactctccaaagcctttgcatgataa |
43394213 |
T |
|
| Q |
201 |
caaaccacaggtttctcctccttcttcaaagtaagatttcttcttcttatttatttatgtttgtgtgatgctagtttcttttagtatttatagtttcttc |
300 |
Q |
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| T |
43394212 |
caaaccacaggtttctcctccttcttcaaagtaagatttcttcttcttatttatttatgtttgtgtgatgctagtttcttttagtgtttatagtttcttc |
43394113 |
T |
|
| Q |
301 |
tgtgagtttacaaaatgttgaaaacaagaacaaattatgttgaatttgatgtttcttttggtgttgagtaattgagtatgcggataattcagaggaagag |
400 |
Q |
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| T |
43394112 |
tgtgagtttacaaaatgttgaaaacaagaacaaattatgttgaatttgatgtttcttttggcgttgagtaattgagtatgcggataattcagaggaagag |
43394013 |
T |
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| Q |
401 |
g |
401 |
Q |
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| T |
43394012 |
g |
43394012 |
T |
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