View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1415_low_8 (Length: 431)

Name: NF1415_low_8
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1415_low_8
NF1415_low_8
[»] chr7 (18 HSPs)
chr7 (317-415)||(46659709-46659807)
chr7 (141-233)||(8150022-8150114)
chr7 (141-233)||(6697144-6697236)
chr7 (140-203)||(29996979-29997042)
chr7 (140-199)||(32971968-32972027)
chr7 (139-199)||(47238315-47238375)
chr7 (140-203)||(23111039-23111102)
chr7 (139-180)||(37264428-37264469)
chr7 (141-233)||(9658901-9658993)
chr7 (139-199)||(32776081-32776141)
chr7 (140-199)||(27621935-27621994)
chr7 (142-191)||(23058924-23058972)
chr7 (143-216)||(40023681-40023754)
chr7 (254-287)||(46659848-46659881)
chr7 (144-216)||(3667832-3667904)
chr7 (139-199)||(21446534-21446594)
chr7 (141-229)||(33773995-33774083)
chr7 (139-191)||(49100453-49100504)
[»] chr5 (11 HSPs)
chr5 (140-199)||(5147447-5147506)
chr5 (139-199)||(15564843-15564903)
chr5 (139-216)||(41594798-41594875)
chr5 (139-199)||(13016314-13016374)
chr5 (139-199)||(13087692-13087752)
chr5 (139-191)||(31196425-31196477)
chr5 (140-199)||(31090402-31090461)
chr5 (140-199)||(38979002-38979061)
chr5 (140-199)||(42819001-42819060)
chr5 (139-199)||(39060373-39060432)
chr5 (140-199)||(39060902-39060964)
[»] chr4 (18 HSPs)
chr4 (143-233)||(4485929-4486019)
chr4 (141-233)||(40020897-40020992)
chr4 (141-216)||(43125880-43125955)
chr4 (140-198)||(20964238-20964296)
chr4 (139-192)||(49218732-49218785)
chr4 (141-197)||(1920829-1920884)
chr4 (141-216)||(3511944-3512020)
chr4 (141-233)||(13529925-13530017)
chr4 (140-192)||(28330899-28330951)
chr4 (140-192)||(42132920-42132972)
chr4 (139-191)||(47277631-47277683)
chr4 (141-199)||(3503009-3503068)
chr4 (141-180)||(18872606-18872645)
chr4 (140-207)||(25902412-25902479)
chr4 (141-188)||(46958828-46958875)
chr4 (141-203)||(9051929-9051990)
chr4 (140-216)||(48400582-48400658)
chr4 (141-225)||(20294086-20294170)
[»] chr2 (15 HSPs)
chr2 (141-214)||(14384063-14384136)
chr2 (140-232)||(43950399-43950491)
chr2 (139-233)||(10069535-10069629)
chr2 (141-207)||(733963-734029)
chr2 (140-189)||(6972491-6972540)
chr2 (143-192)||(13222173-13222222)
chr2 (153-197)||(2882085-2882129)
chr2 (139-202)||(39166642-39166708)
chr2 (140-199)||(314525-314584)
chr2 (141-180)||(5425975-5426014)
chr2 (141-216)||(12949916-12949991)
chr2 (145-180)||(44024824-44024859)
chr2 (141-214)||(13026652-13026726)
chr2 (139-180)||(928488-928529)
chr2 (140-192)||(2048397-2048448)
[»] chr1 (18 HSPs)
chr1 (140-199)||(26760374-26760433)
chr1 (141-203)||(37541065-37541127)
chr1 (143-203)||(705303-705363)
chr1 (153-224)||(46273232-46273304)
chr1 (140-199)||(26583826-26583885)
chr1 (139-192)||(29756092-29756145)
chr1 (140-192)||(3160638-3160690)
chr1 (139-199)||(26924070-26924130)
chr1 (141-224)||(7224473-7224556)
chr1 (141-180)||(42309545-42309584)
chr1 (141-179)||(13409730-13409768)
chr1 (140-233)||(32587828-32587921)
chr1 (140-197)||(10587533-10587590)
chr1 (139-180)||(14090753-14090794)
chr1 (139-180)||(25418758-25418799)
chr1 (141-216)||(39420667-39420743)
chr1 (139-191)||(49494114-49494165)
chr1 (139-199)||(52830365-52830424)
[»] chr6 (6 HSPs)
chr6 (144-180)||(7167869-7167905)
chr6 (139-233)||(7739468-7739562)
chr6 (141-207)||(8569593-8569657)
chr6 (140-202)||(15325241-15325303)
chr6 (140-197)||(15351334-15351391)
chr6 (155-199)||(20027680-20027724)
[»] chr8 (10 HSPs)
chr8 (140-199)||(14690058-14690117)
chr8 (139-192)||(45420888-45420941)
chr8 (139-199)||(1494197-1494257)
chr8 (140-199)||(32231336-32231395)
chr8 (158-196)||(14401090-14401128)
chr8 (139-197)||(33746169-33746226)
chr8 (141-206)||(2797130-2797195)
chr8 (141-186)||(8840438-8840483)
chr8 (144-216)||(2195548-2195620)
chr8 (141-225)||(36011945-36012029)
[»] chr3 (4 HSPs)
chr3 (160-226)||(38524263-38524329)
chr3 (144-216)||(39329705-39329777)
chr3 (141-199)||(44218986-44219044)
chr3 (144-216)||(42547061-42547133)
[»] scaffold0262 (1 HSPs)
scaffold0262 (139-216)||(12385-12463)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 46659807 - 46659709
Alignment:
Q  317 ataactcactaattttaggagagtggagtagaatttaataggcataactatcataatacaaatgaaaatgttgtcatattcattaattgatgataaaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  46659807 ataactcactaattttaggagagtggagtagaatttaataggcataactatcacaatacaaatgaaaatgttatcatattcattaattgatgataaaaa 46659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 8150114 - 8150022
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttccattat 233  Q
    ||||||||||| |||||||||||||| ||||||||||||| | ||||||||| |||| | |||||| |||| ||||| |||||||||||||||    
T  8150114 tcatttcacacatattaagaaaaaatgtataagtgaaagagagagaaaaatggttttaagtgttttgtcaaatatttgtgcattttccattat 8150022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 6697236 - 6697144
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttccattat 233  Q
    ||||||||||| |||||||||||||| ||||||||||||| | |||||||| ||||| | |||||| ||  |||||  |||||||| ||||||    
T  6697236 tcatttcacacttattaagaaaaaatgtataagtgaaagaaagagaaaaataattttaagtgttttgtcgtgtattggtgcatttttcattat 6697144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 29996979 - 29997042
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt 203  Q
    |||||||||||| |||||||||||| | ||||||||||||| | ||||||||| ||||||||||    
T  29996979 ctcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatggttttgaatgt 29997042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 32971968 - 32972027
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||||| ||||||||||||| | ||||||||| ||||||    
T  32971968 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatggttttga 32972027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 47238375 - 47238315
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | ||||||||| ||||||    
T  47238375 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttga 47238315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 23111039 - 23111102
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt 203  Q
    ||||||||| || |||||||||||||| ||||| ||||| | | ||||||||||||||||||||    
T  23111039 ctcatttcatacttattaagaaaaaatgtataaatgaaatagagagaaaaatgattttgaatgt 23111102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 37264469 - 37264428
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  37264469 gctcatttcacacatattaagaaaaagtatataagtgaaaga 37264428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 9658993 - 9658901
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttccattat 233  Q
    ||||||||||| |||||||||||||| || ||| |||||| | ||||||||| |||||| ||| || | || ||||  |||||||||| ||||    
T  9658993 tcatttcacacatattaagaaaaaatgtacaagcgaaagagagagaaaaatggttttgagtgtcttgtgaactattggtgcattttcccttat 9658901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 32776141 - 32776081
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | |||||||||| || | ||||||||| ||||||    
T  32776141 gctcatttcacacatattaagaaaaagtgtataagtgaaggagagagaaaaatggttttga 32776081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 27621994 - 27621935
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||||| |||||   ||||| | ||||||||||||||||    
T  27621994 ctcatttcacacttattaagaaaaaatgtataatgaaaagagaaagaaaaatgattttga 27621935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 23058972 - 23058924
Alignment:
Q  142 catttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaat 191  Q
    ||||||||||||||||||| ||||||||||| ||||||| | ||||||||    
T  23058972 catttcacacgtattaaga-aaaatatataaatgaaagagagagaaaaat 23058924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 40023681 - 40023754
Alignment:
Q  143 atttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    |||||||| ||||||||||||||||||||| ||||| | | ||||||||  |||||| ||| || |||| ||||    
T  40023681 atttcacatgtattaagaaaaaatatataattgaaaaagagagaaaaattgttttgagtgtcttgtcaaatatt 40023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 46659881 - 46659848
Alignment:
Q  254 taattaatattgcactaaaaggtgaaatgagtcc 287  Q
    |||||||||||||||||||| |||||||||||||    
T  46659881 taattaatattgcactaaaatgtgaaatgagtcc 46659848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 3667832 - 3667904
Alignment:
Q  144 tttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    |||||||| |||||||||| | | ||||||||||| | | |||||||| ||||||| ||| || |||||||||    
T  3667832 tttcacacatattaagaaatagtgtataagtgaaaaaaagagaaaaataattttgagtgtcttatcaagtatt 3667904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 21446594 - 21446534
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||| | || |||||||||||| | ||||||||||||| | |||||||| |||||||    
T  21446594 gctcattttatacttattaagaaaaattgtataagtgaaagagagagaaaaataattttga 21446534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 33773995 - 33774083
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttcca 229  Q
    ||||||||||  |||||||||||| | ||||||||||||| | ||||||||  |||||| ||| || | ||||||| ||| ||| ||||    
T  33773995 tcatttcacatatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtcttgttaagtattgatgtattctcca 33774083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 49100453 - 49100504
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaat 191  Q
    ||||||||||||||||||||| |||||| ||||| ||||||| | ||||||||    
T  49100453 gctcatttcacacgtattaag-aaaaatgtataaatgaaagacagagaaaaat 49100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 5147447 - 5147506
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  5147447 ctcatttcacacttattaagaaaaaatatataagtgaaagaaagagaaaaatgattttga 5147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 15564843 - 15564903
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | |||||||| |||||||    
T  15564843 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaataattttga 15564903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 41594798 - 41594875
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatt 216  Q
    |||||||||| || ||||||||||| ||||||||||||| || | |||||||| ||||| ||||||||| |||||||||    
T  41594798 gctcatttcatacatattaagaaaa-atatataagtgaatgagagagaaaaataattttaaatgtttttgtcaagtatt 41594875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 13016314 - 13016374
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | || |||||||||| | |||||||||| |||||    
T  13016314 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttga 13016374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 13087692 - 13087752
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | || |||||||||| | |||||||||| |||||    
T  13087692 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttga 13087752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 31196477 - 31196425
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaat 191  Q
    ||||||||||||| ||||||||||| || ||||| ||||||| ||||||||||    
T  31196477 gctcatttcacacttattaagaaaatatgtataaatgaaagagatagaaaaat 31196425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 31090461 - 31090402
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||| |||  |||||||||||||| ||||||||||| | | ||||||||||||||||    
T  31090461 ctcattttacatttattaagaaaaaatgtataagtgaaaaagagagaaaaatgattttga 31090402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 38979061 - 38979002
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||| | || ||| |||||| ||||||||||| ||||||    
T  38979061 ctcatttcacacttattaagaaaaagtgtacaagggaaagagatagaaaaatggttttga 38979002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 42819060 - 42819001
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||| | ||||||| ||||| | ||||||||| ||||||    
T  42819060 ctcatttcacacttattaagaaaaagtgtataagtaaaagagaaagaaaaatggttttga 42819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 39060373 - 39060432
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| ||||||| |||||||||| |||||| || | ||||||||| ||||||    
T  39060373 gctcatttcacacttattaag-aaaaatatattagtgaaggagagagaaaaatggttttga 39060432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 39060902 - 39060964
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaat---atataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| ||||||||||||||    ||||||||||||| | |||||||||| |||||    
T  39060902 ctcatttcacacttattaagaaaaaatgtagtataagtgaaagagagagaaaaatgagtttga 39060964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 4486019 - 4485929
Alignment:
Q  143 atttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttccattat 233  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||  |||||| |||||| |||| |||| || |||||||||||||    
T  4486019 atttcacaaatattaagaaaaaatatataagtgaaagaaagagaaaaatagttttgagtgttttgtcaaatattaattcattttccattat 4485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 40020897 - 40020992
Alignment:
Q  141 tcatttcacacgtattaagaaaaaa-tata-taagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatttatgcattttccattat 233  Q
    ||||||||||| ||||||||||||  |||| |||||||| || | ||||||||| |||||||||||||| |||||||||  ||||||| |||||||    
T  40020897 tcatttcacacatattaagaaaaatgtatactaagtgaatgagagagaaaaatggttttgaatgtttttgtcaagtattggtgcatttaccattat 40020992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 43125955 - 43125880
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    ||||||||||| |||||| ||||||| ||||||  ||||| | |||||||| ||||| |||||||| |||||||||    
T  43125955 tcatttcacacatattaaaaaaaaatgtataagcaaaagagaaagaaaaataattttaaatgttttgtcaagtatt 43125880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 20964238 - 20964296
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttg 198  Q
    |||||||||||| |||||||||||| | ||||||||||||| | |||||||||| ||||    
T  20964238 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttg 20964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 49218732 - 49218785
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  49218732 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatg 49218785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 1920884 - 1920829
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgatttt 197  Q
    ||||||||||| |||||||||||||| ||||||||||||| | | ||||||||||||    
T  1920884 tcatttcacacatattaagaaaaaatgtataagtgaaagaaaga-aaaaatgatttt 1920829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 3511944 - 3512020
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatat-ataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    ||||||||||  ||||||||||||| || |||||||||||| | || ||||||||||||| |||||| | |||||||    
T  3511944 tcatttcacaaatattaagaaaaaaaattataagtgaaagaaagaggaaaatgattttgagtgttttgtaaagtatt 3512020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 13530017 - 13529925
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattttccattat 233  Q
    ||||||||||| |||||||||||||| || ||| |||||| | ||||||||| |||||| ||| || | || ||||  |||||||||| ||||    
T  13530017 tcatttcacacatattaagaaaaaatgtacaagcgaaagagagagaaaaatggttttgagtgtcttgtgaactattggtgcattttcccttat 13529925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 28330951 - 28330899
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    |||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  28330951 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatg 28330899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 42132972 - 42132920
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    |||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  42132972 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatg 42132920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 47277631 - 47277683
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaat 191  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||| | ||||||    
T  47277631 gctcatttcacacatattaagaaaaaatgtataagtaaaagatagataaaaat 47277683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 3503009 - 3503068
Alignment:
Q  141 tcatttcacacgtattaagaaaaaa-tatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||  ||||||||||||| | ||||||||||||| | ||||||||||||||||    
T  3503009 tcatttcacaaatattaagaaaaaaatgtataagtgaaagaaagagaaaaatgattttga 3503068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 18872606 - 18872645
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  18872606 tcatttcacacgtattaagaaaaagtgtataagtgaaaga 18872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 25902412 - 25902479
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt 207  Q
    |||||||||||| |||||||||||| | |||||||||||||   || |||||| |||||| |||||||    
T  25902412 ctcatttcacacatattaagaaaaagtgtataagtgaaagaggaagtaaaatggttttgagtgttttt 25902479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 46958875 - 46958828
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaa 188  Q
    ||||||||||| |||||||||||| | ||||||||||||||| |||||    
T  46958875 tcatttcacacatattaagaaaaagtgtataagtgaaagatagagaaa 46958828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 9051929 - 9051990
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt 203  Q
    |||||||||| |||||||||||| |||||||| |  |||| | ||||||||||||||||||||    
T  9051929 tcatttcacatgtattaagaaaa-atatataaatataagaaagagaaaaatgattttgaatgt 9051990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 48400582 - 48400658
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatg-ttttttcaagtatt 216  Q
    ||||||||||||  ||||||||||| | ||||| ||||||| | |||||||||||||| |||| |||| |||||||||    
T  48400582 ctcatttcacacagattaagaaaaa-tgtataaatgaaagagagagaaaaatgatttttaatgcttttatcaagtatt 48400658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 20294170 - 20294086
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattt 225  Q
    |||||||||| ||||||||||||| |   ||| | ||||| | ||||||||||||| || |||| | ||||||||| ||||||||    
T  20294170 tcatttcacatgtattaagaaaaagtgagtaaataaaagagagagaaaaatgatttggagtgttatatcaagtattgatgcattt 20294086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 14384063 - 14384136
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagta 214  Q
    |||||||| || |||||||||||||||||||| ||||||| | ||||||||| ||||||||| ||| |||||||    
T  14384063 tcatttcatacatattaagaaaaaatatataaatgaaagagagagaaaaatggttttgaatgctttatcaagta 14384136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 43950399 - 43950491
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatttatgcattttccatta 232  Q
    |||||||||||| |||||| ||||||| ||||||||||||| | ||||||||  |||| ||||||||| | ||||||| ||| |||||||||||    
T  43950399 ctcatttcacacttattaa-aaaaaatgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatgtattttccatta 43950491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 10069535 - 10069629
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaat-gttttttcaagtatttatgcattttccattat 233  Q
    |||||||||||||  |||||||||| |||||||||||||||| | | |||||||||||| | |  |||| |||||||||| ||||||| |||||||    
T  10069535 gctcatttcacactcattaagaaaa-atatataagtgaaagagagataaaaatgattttaagtacttttgtcaagtatttgtgcatttaccattat 10069629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 733963 - 734029
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt 207  Q
    |||||| |||||||||| || ||||| ||||| ||||||| | |||||||||||||||||| |||||    
T  733963 tcattttacacgtattacgataaaatgtataaatgaaagagagagaaaaatgattttgaatattttt 734029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 6972491 - 6972540
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaa 189  Q
    |||||||||||| |||||||||||||| ||||||||||||| | ||||||    
T  6972491 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaa 6972540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 13222222 - 13222173
Alignment:
Q  143 atttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    ||||||||| |||||||||||||| ||||||||||||| | |||||||||    
T  13222222 atttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatg 13222173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 2882129 - 2882085
Alignment:
Q  153 tattaagaaaaaatatataagtgaaagatatagaaaaatgatttt 197  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  2882129 tattaagaaaaaatgtataaatgaaagagatagaaaaatgatttt 2882085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 39166642 - 39166708
Alignment:
Q  139 gctcatttcacacgtattaagaaaaa---atatataagtgaaagatatagaaaaatgattttgaatg 202  Q
    ||||||||||||  |||||| |||||   |||||||||||||||| | |||||||||||||||||||    
T  39166642 gctcatttcacatttattaaaaaaaatatatatataagtgaaagagaaagaaaaatgattttgaatg 39166708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 314584 - 314525
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||| | ||||||||||||| | || |||||| ||||||    
T  314584 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagaggaaaatggttttga 314525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 5426014 - 5425975
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  5426014 tcatttcacacgtattaagaaaaagtgtataagtgaaaga 5425975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 12949916 - 12949991
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    ||||||||||  ||||| |||||||| ||||||||||||| | | |||||| ||||||| ||| || |||||||||    
T  12949916 tcatttcacatatattacgaaaaaatgtataagtgaaagagagaaaaaaataattttgagtgtcttgtcaagtatt 12949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 44024859 - 44024824
Alignment:
Q  145 ttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    |||||||||||||||||||||| |||||||||||||    
T  44024859 ttcacacgtattaagaaaaaatctataagtgaaaga 44024824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 13026726 - 13026652
Alignment:
Q  141 tcatttcacacgtattaagaaaaaata-tataagtgaaagatatagaaaaatgattttgaatgttttttcaagta 214  Q
    ||||||||||  ||||||||||||||  ||||||||||||| | |||||||| ||||||| ||| || |||||||    
T  13026726 tcatttcacatttattaagaaaaaattgtataagtgaaagaaaaagaaaaataattttgagtgtcttgtcaagta 13026652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 928488 - 928529
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    ||||||||||||| |||||||||||||  |||||||||||||    
T  928488 gctcatttcacacttattaagaaaaaacgtataagtgaaaga 928529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 2048448 - 2048397
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    |||||||||||| |||||| ||||||| ||||||||||||| | |||||||||    
T  2048448 ctcatttcacacttattaa-aaaaaatgtataagtgaaagagagagaaaaatg 2048397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 26760433 - 26760374
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  26760433 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatgagtttga 26760374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 37541065 - 37541127
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt 203  Q
    ||||||||||| |||||||||||| | ||||||||||||| | ||||||||| ||||||||||    
T  37541065 tcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgaatgt 37541127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 705303 - 705363
Alignment:
Q  143 atttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt 203  Q
    |||||| || |||||||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  705303 atttcatacatattaagaaaaaatgtataagttaaagagaaagaaaaatgattttgaatgt 705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 46273304 - 46273232
Alignment:
Q  153 tattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatttatgcatt 224  Q
    |||||||||||||| ||||| ||||  | |||||||||| ||||||||||||||| ||||||||| |||||||    
T  46273304 tattaagaaaaaatgtataaatgaataagatagaaaaataattttgaatgtttttgtcaagtattgatgcatt 46273232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 26583885 - 26583826
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||| | ||||||||||||| | |||||||||| |||||    
T  26583885 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttga 26583826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 29756092 - 29756145
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  29756092 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatg 29756145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 3160638 - 3160690
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    |||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  3160638 ctcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatg 3160690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 26924070 - 26924130
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| |||||||||||| | || |||||||||| | |||||||||| |||||    
T  26924070 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttga 26924130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 7224556 - 7224473
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcatt 224  Q
    ||||||||||| |||||| ||||||| ||||||||||||| |  |||||||| |||||| | | ||  |||||||| |||||||    
T  7224556 tcatttcacacatattaaaaaaaaatgtataagtgaaagaaagcgaaaaatggttttgagtttcttgacaagtattgatgcatt 7224473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 42309584 - 42309545
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  42309584 tcatttcacatatattaagaaaaaatatataagtgaaaga 42309545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 13409730 - 13409768
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaag 179  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  13409730 tcatttcacatatattaagaaaaaatatataagtgaaag 13409768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 32587921 - 32587828
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatttatgcattttccattat 233  Q
    |||||||||||| |||||||| ||||| ||||| |||| |  | |||||||| ||||| | ||||||| | ||||||| ||||||||||||||||    
T  32587921 ctcatttcacacatattaaga-aaaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattat 32587828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 10587533 - 10587590
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgatttt 197  Q
    |||||||||||| |||||||||||| |  |||||||||||| | |||||||| |||||    
T  10587533 ctcatttcacacttattaagaaaaagtgcataagtgaaagaaagagaaaaataatttt 10587590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 14090794 - 14090753
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  14090794 gctcatttcacacttattaagacaaaatgtataagtgaaaga 14090753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 25418799 - 25418758
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  25418799 gctcatttcatacatattaagaaaaattatataagtgaaaga 25418758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 39420743 - 39420667
Alignment:
Q  141 tcatttcacacgtattaagaaaaaa-tatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    ||||||||| | ||||||||||||| | ||||| ||||||| | |||||||| ||||||| ||| || |||||||||    
T  39420743 tcatttcacgcatattaagaaaaaagtgtataaatgaaagagagagaaaaataattttgagtgtcttgtcaagtatt 39420667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 49494114 - 49494165
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaat 191  Q
    ||||||||||||||||||||| |||||| ||||| ||||||| | ||||||||    
T  49494114 gctcatttcacacgtattaag-aaaaatgtataaatgaaagagagagaaaaat 49494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 52830365 - 52830424
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||||||||||| ||||||| ||||| |||| || | |||||||| |||||||    
T  52830365 gctcatttcacacgtattaa-aaaaaatgtataaatgaaggagagagaaaaataattttga 52830424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 7167905 - 7167869
Alignment:
Q  144 tttcacacgtattaagaaaaaatatataagtgaaaga 180  Q
    |||||||||||||||||||||||||||||||||||||    
T  7167905 tttcacacgtattaagaaaaaatatataagtgaaaga 7167869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 7739468 - 7739562
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt-tcaagtatttatgcattttccattat 233  Q
    |||||||||||| ||| ||||||||| | ||||||||||||| ||||||||||  |||  ||||||||| | ||||||| |||||||  |||||||    
T  7739468 gctcatttcacatgtaataagaaaaa-tgtataagtgaaagagatagaaaaatagtttaaaatgtttttgttaagtattgatgcattcaccattat 7739562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 8569593 - 8569657
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttt 207  Q
    ||||||||||||||||||  |||||| |||||||||| || | |||||||||||||| | |||||||    
T  8569593 tcatttcacacgtattaa--aaaaatgtataagtgaatgagaaagaaaaatgattttaagtgttttt 8569657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 15325303 - 15325241
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatg 202  Q
    |||||||||||  |||||||||||| | ||||||||||||| | |||||| || |||||||||    
T  15325303 ctcatttcacaattattaagaaaaagtgtataagtgaaagagagagaaaattggttttgaatg 15325241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 15351334 - 15351391
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgatttt 197  Q
    |||||||||||  |||||||||||||| |||||||||| || | |||||| |||||||    
T  15351334 ctcatttcacaattattaagaaaaaatgtataagtgaatgagagagaaaattgatttt 15351391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 20027724 - 20027680
Alignment:
Q  155 ttaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||| | ||||||||||||| |||| |||||||||||||    
T  20027724 ttaagaaaaagtgtataagtgaaagaaatagcaaaatgattttga 20027680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 14690117 - 14690058
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||| |||||||||||| | ||||||||||||| | ||||||||| ||||||    
T  14690117 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttga 14690058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 45420888 - 45420941
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatg 192  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | |||||||||    
T  45420888 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatg 45420941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 1494197 - 1494257
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||||| ||||||| |||||| |||| ||||||||   ||||||||||||||||    
T  1494197 gctcatttcacacttattaaggaaaaatgtatatgtgaaagagtgagaaaaatgattttga 1494257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 32231336 - 32231395
Alignment:
Q  140 ctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    |||||||||||  |||||||||||||| ||||||||||||| | || |||||| ||||||    
T  32231336 ctcatttcacatttattaagaaaaaatgtataagtgaaagagagaggaaaatggttttga 32231395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 14401128 - 14401090
Alignment:
Q  158 agaaaaaatatataagtgaaagatatagaaaaatgattt 196  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  14401128 agaaaaaatatataagtgaaagagagagaaaaatgattt 14401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 33746169 - 33746226
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgatttt 197  Q
    |||||||||||||||||||| ||||||| ||||| ||||||| | |||||||| |||||    
T  33746169 gctcatttcacacgtattaa-aaaaaatgtataaatgaaagaaaaagaaaaataatttt 33746226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 2797195 - 2797130
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgtttt 206  Q
    ||||||||||  |||||||||||| |  |||||||||||| | ||||||||| |||||| ||||||    
T  2797195 tcatttcacaactattaagaaaaagtgaataagtgaaagaaagagaaaaatggttttgagtgtttt 2797130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 8840483 - 8840438
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatataga 186  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||||    
T  8840483 tcatttcacacatattaagaaaaattgtataagtgaaagagataga 8840438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 2195620 - 2195548
Alignment:
Q  144 tttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    |||||||| |||||||||||| | ||||||||||||| | ||||||||  |||||| ||| || | |||||||    
T  2195620 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtcttgttaagtatt 2195548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 36011945 - 36012029
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcattt 225  Q
    ||||||||||  | |||||||||  | ||||||||||||| | ||| ||||| |||||| ||| || ||||||||| ||||||||    
T  36011945 tcatttcacatatgttaagaaaatgtgtataagtgaaagagaaagagaaatggttttgagtgtcttgtcaagtattgatgcattt 36012029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 38524263 - 38524329
Alignment:
Q  160 aaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatttatgcatttt 226  Q
    ||||||| ||||||||||||| | ||||||||  ||||||||||||| ||||||||| ||| |||||    
T  38524263 aaaaaatgtataagtgaaagaaaaagaaaaatagttttgaatgttttatcaagtattgatgtatttt 38524329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 39329705 - 39329777
Alignment:
Q  144 tttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    |||||||| |||||||||||||| ||||||||||||| | ||| ||||  |||||||||| || | |||||||    
T  39329705 tttcacacatattaagaaaaaatgtataagtgaaagagaaagataaatagttttgaatgtcttgttaagtatt 39329777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 44218986 - 44219044
Alignment:
Q  141 tcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttga 199  Q
    ||||||||||| |||||||||||| | ||||||| ||||| | ||||||||| ||||||    
T  44218986 tcatttcacacatattaagaaaaagtgtataagtcaaagaaagagaaaaatggttttga 44219044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 42547061 - 42547133
Alignment:
Q  144 tttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgttttttcaagtatt 216  Q
    |||||||| |||||||||||||| ||||||| ||||| | | ||||||  |||||||||| || | |||||||    
T  42547061 tttcacacatattaagaaaaaatttataagtaaaagagagaaaaaaatagttttgaatgtcttgttaagtatt 42547133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 12385 - 12463
Alignment:
Q  139 gctcatttcacacgtattaagaaaaaatatataagtgaaagatatagaaaaatgattttgaatgt-tttttcaagtatt 216  Q
    |||||||||||||||||||||||||||  ||||| ||||||| |  ||| |||| |||||| ||| ||| |||||||||    
T  12385 gctcatttcacacgtattaagaaaaaacgtataaatgaaagagagtgaataatggttttgagtgtctttgtcaagtatt 12463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University