View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1415_low_9 (Length: 424)
Name: NF1415_low_9
Description: NF1415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1415_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32119808 - 32119589
Alignment:
| Q |
1 |
catggagagaaaagagaaaacaaagtggccaaaatagtcctgaggaaataataaggatgtaaaaatagtaatttgatgcagattagaagtggctggtgtc |
100 |
Q |
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| T |
32119808 |
catggagagaaaagagaaaacaaagtggccaaaatagtcctgaggaaataataaggaggtaaaaatagtaatttgatgcagattagaagtggctggtgtc |
32119709 |
T |
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| Q |
101 |
aataaaaggtataagaaaaatgtgaacaatcttcaaagtttaattgtagctaaataaaataggttggtggcagctannnnnnnnagaagtgttgtttagg |
200 |
Q |
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| T |
32119708 |
aat-aaaggtataagaaaaatgtgaacaatcttcaaagtttaattgtagctaaataaaataggttggtggcagctattttttttagaagtgttgtttagg |
32119610 |
T |
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| Q |
201 |
cacttgtgaactagagattca |
221 |
Q |
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| T |
32119609 |
cacttgtgaactagagattca |
32119589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 32119527 - 32119404
Alignment:
| Q |
283 |
tctcaatatttctatgttccaacatactacttaggaaaacacaatttgtttccatttttaacatgaaatagatagcaaattgatggcattatgttactga |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119527 |
tctcaatatttctatgttccaacatactacttaggaaaacacaaattgtttccatttttaacatgaaatagatagcaaattgatggcattatgttactga |
32119428 |
T |
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| Q |
383 |
gtttcactcatgttaatatgatca |
406 |
Q |
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| T |
32119427 |
gtttcactcatgttaatatgatca |
32119404 |
T |
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