View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_high_13 (Length: 239)
Name: NF14160_high_13
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2885752 - 2885530
Alignment:
| Q |
1 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2885752 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagc |
2885653 |
T |
|
| Q |
101 |
atggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2885652 |
atggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagat |
2885553 |
T |
|
| Q |
201 |
ctttcgatgtggtaagatgcttc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2885552 |
ctttcgatgtggtaagatgcttc |
2885530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2861186 - 2860966
Alignment:
| Q |
1 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagc |
100 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2861186 |
cacaattatccaaacatatcttggtgctaactcgagtcaaagagccaagagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagc |
2861087 |
T |
|
| Q |
101 |
atggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagat |
200 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
2861086 |
atggacgacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagac |
2860987 |
T |
|
| Q |
201 |
c---tttcgatgtggtaagat |
218 |
Q |
| |
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| ||||||||||||||||| |
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| T |
2860986 |
ctaatttcgatgtggtaagat |
2860966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2866565 - 2866345
Alignment:
| Q |
1 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2866565 |
cacaattatccaaacatatcttggtgctaactcgagtcaaagagccaagagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagc |
2866466 |
T |
|
| Q |
101 |
atggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagat |
200 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
2866465 |
atggacgacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagac |
2866366 |
T |
|
| Q |
201 |
c---tttcgatgtggtaagat |
218 |
Q |
| |
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| ||||||||||||||||| |
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| T |
2866365 |
ctaatttcgatgtggtaagat |
2866345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 2833839 - 2833731
Alignment:
| Q |
51 |
gacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttg |
150 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| ||| |||||||| |||||||| || || ||||| ||| ||||||||||||||||||||||||||| |
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| T |
2833839 |
gacttaaagctgaagttgtcaaagatagccaaaacccacttgtcctaagcatggatgataatgaagaaatcatagatgagttcaatggagtcaaagtttg |
2833740 |
T |
|
| Q |
151 |
gtggtctgc |
159 |
Q |
| |
|
|||| |||| |
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|
| T |
2833739 |
gtggactgc |
2833731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 2841731 - 2841893
Alignment:
| Q |
1 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagc |
100 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| || |||| | | ||||| |||| |||||| | ||||||||||| || ||||| || ||| |
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| T |
2841731 |
cacaaccatccaaacatatcttagtgctaactcttcacaaagagctagaagacttaaagctgaagttatcaaagatagccaaaatccacttgttctaagc |
2841830 |
T |
|
| Q |
101 |
atggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaat |
163 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2841831 |
atggatgacaaccaagagatcacagatgagttcaatggtgtcaaagtttggtggtcagcaaat |
2841893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 2910558 - 2910449
Alignment:
| Q |
58 |
agccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtct |
157 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||| || || || |||| |||||||||||||||||| ||||| || || |||||| || ||||||||||| |
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|
| T |
2910558 |
agccaaagttgtcgaagatagccaaactccggttatctttggcatagacgacaacgaagagatcaccgatgattttaaaggagtcgaaatttggtggtct |
2910459 |
T |
|
| Q |
158 |
gcaaatagca |
167 |
Q |
| |
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||||| |||| |
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| T |
2910458 |
gcaaacagca |
2910449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 2828448 - 2828544
Alignment:
| Q |
58 |
agccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtgg |
154 |
Q |
| |
|
|||||||||||| ||| |||| ||| | || |||||||||| ||| || || || ||||||||| |||| | ||||||||||||||| |||||||| |
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|
| T |
2828448 |
agccgaagttgtcgaaaatagtcaaactccacttgtccttaccattgatgataatgaagagatcatagataaattcaatggagtcaaaatttggtgg |
2828544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2910600 - 2910552
Alignment:
| Q |
1 |
cacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaa |
49 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
2910600 |
cacagtcatccaaacatatcttggtgctaactcgagtgaaagagccaaa |
2910552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 14577537 - 14577649
Alignment:
| Q |
42 |
gagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagt |
141 |
Q |
| |
|
|||||||| ||||| | || |||||||| ||| |||| ||| ||||||||||||| | ||||| ||||| || |||||| ||| | ||||||||||| |
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| T |
14577537 |
gagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccgcttgtcctcaccatgggtgacaatgaggagatcattgataaattcaatggagt |
14577636 |
T |
|
| Q |
142 |
caaagtttggtgg |
154 |
Q |
| |
|
||||| |||||| |
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|
| T |
14577637 |
aaaagtatggtgg |
14577649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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