View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_high_18 (Length: 225)
Name: NF14160_high_18
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 31075858 - 31075658
Alignment:
| Q |
8 |
aatgacacggaaggagtactattttagtaccatttccatggtttacaaaagacacaaattgtgaatatgccaatttagatctttcaagttaacacaatcc |
107 |
Q |
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| T |
31075858 |
aatggcacggaaggagtactattttagtaccatttccatggtttacaaaagacacaaattgtgaatatgccaatttagatctttcaagttaacacaatcc |
31075759 |
T |
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| Q |
108 |
ttagtttgaattttgttttgtatcccattgttttgaatgatgaatggtacaactaaattgaagtcgaccaaaattcacgagtcaatggaaactgaatttt |
207 |
Q |
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| T |
31075758 |
ttagtttgaattttgttttgtatcccattgttttgaatgatgaatggtacaactaaattgaagtcgaccaaaattcacgagtcaatggaaactgaatttt |
31075659 |
T |
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| Q |
208 |
t |
208 |
Q |
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| T |
31075658 |
t |
31075658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 31091802 - 31091867
Alignment:
| Q |
80 |
atttagatctttcaagttaacacaatccttagtttgaa-ttttgttttgtatcccattgttttgaa |
144 |
Q |
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| T |
31091802 |
atttaaatctttcaatttaacacaatcctttgtttgaatttttgttttgtatcccattgttttgaa |
31091867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 31040166 - 31040110
Alignment:
| Q |
80 |
atttagatctttcaagttaacacaatccttagtttgaattttgttttgtatcccatt |
136 |
Q |
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| T |
31040166 |
atttaaatctttcaatttaacacaatcctttatttgaattttgttttgtatcccatt |
31040110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 31039946 - 31039914
Alignment:
| Q |
142 |
gaatgatgaatggtacaactaaattgaagtcga |
174 |
Q |
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| T |
31039946 |
gaatgatgaatggtacaactaaattgaagtcga |
31039914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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