View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_high_20 (Length: 224)
Name: NF14160_high_20
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_high_20 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 46149 - 46325
Alignment:
| Q |
1 |
acactacatattcaaatgcgtatttagatcgctttaatcatgtaactttttgtaggcattattataccgatttatgatattgacttcaatgatgtaaatt |
100 |
Q |
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| T |
46149 |
acactacatattcaaatgcgtatttagatcgctttaatcatgtaactttttgtaggcatta---taccgatttatgatattgacttcaatgatgtaaatt |
46245 |
T |
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| Q |
101 |
tagttgcaaattcatcttttaagtttcaatgacacaaaa-ttttattgttcttgattttatctaccgattcaaatgaata |
179 |
Q |
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| T |
46246 |
tagttgcaatttcatcttttaagtttcaatgacacaaaatttttattgttgttgattttatctaccgatttaaatgaata |
46325 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 51629039 - 51628989
Alignment:
| Q |
71 |
tttatgatattgacttcaatgatgtaaatttagttgcaaattcatctttta |
121 |
Q |
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|||||| |||| |||| |||||||| |||||| |||||||||||||||||| |
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| T |
51629039 |
tttatgctattaacttaaatgatgtgaatttatttgcaaattcatctttta |
51628989 |
T |
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