View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14160_high_4 (Length: 473)
Name: NF14160_high_4
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 48255047 - 48255492
Alignment:
| Q |
18 |
ttagatgcagtagcagacgtaattttcgaaccattttaaaattgttagtgccagttataagagtagaaagtttgtgcattatgtaccttgttgatcagct |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48255047 |
ttagatgcagtaccagacgtaattttcaaaccattttaaaattgttagtgccagttataagagtagaaagtttgtgcattatgtaccttgttgatcagct |
48255146 |
T |
|
| Q |
118 |
tctttaactttggttgcaaattgtttcatttggttgagctgaatagcaagggagaaagggctgatcccagtgacaaacaaagaagtattaggtagaagca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48255147 |
tctttaactttggttgcaaattgtttcatttgggtgagctgaatagcaagggagaaagggctgatcccagtgacaaacaaagaagtattaggtagaagca |
48255246 |
T |
|
| Q |
218 |
cagtggatgccaatgtagcatagttggctccatgtttataataagatcctattgattgtagatatggactcaaaaatggaattccaatagcttgagctgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48255247 |
cagtggatgccaatgtagcatagttggctccatgtttataataagatcctattgattgtagatatggactcaaaaatggaattccaatagcttgagctgc |
48255346 |
T |
|
| Q |
318 |
cagaatcaaataaataaaaatgtttgattgtttaataaattatatatagctctcaaccattaaattatgtctctaatcatggtgaatgacatcacatacc |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48255347 |
cagaatcaaataaatataaatgtttgattgtttaataaatgatatatagctctcaaccattaaattatgtctctaatcatggtgaatgacatcacatacc |
48255446 |
T |
|
| Q |
418 |
aagatatacagagacagcagttgatagagttaatatttatattctt |
463 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
48255447 |
aagatatacagagatagcagttgatagagttaatatttattttctt |
48255492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University