View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_1 (Length: 672)
Name: NF14160_low_1
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_1 |
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| [»] chr3 (10 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 252 - 672
Target Start/End: Complemental strand, 23140820 - 23140401
Alignment:
| Q |
252 |
aatatcgaaaagatgttagttatttttatccaattatattctcattagtttgtaagtgaactatactatgttagctagttttcttttccattgatatatg |
351 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23140820 |
aatatcgaaaagatgttatttatttttatccaattatattctcattagtttgtaagtgaactatactatgttagctagttttcttttccattgatatatg |
23140721 |
T |
|
| Q |
352 |
ccattctatactaagaacattttagtcaacaaatattattggcaaaattacacttttggtctcttaaattttaaggtttgttcggttttggtcccttaag |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23140720 |
ccattctatactaagaacattttagtcaacaaatattattggcaatattacacttttggtctcttaaattttaaggtttgttccgttttggtcccttaag |
23140621 |
T |
|
| Q |
452 |
ttacaatataagcactttaatccctttagttgtttcggttctgttttcctcccttaagttaaaaatattacacaaattgattttttatgttggtcattta |
551 |
Q |
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||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
23140620 |
ttacaatataagcactttagtcccttaagtt-tttcggttctattttcctcccttaagttaaaaatactacacaaattgattttttatgtcggtcgttta |
23140522 |
T |
|
| Q |
552 |
actatgtctaaacatgtattatttacctggaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagatt |
651 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23140521 |
actatgtctaaacatgtattatttacctggaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagatt |
23140422 |
T |
|
| Q |
652 |
gggcaatggtagaaatgataa |
672 |
Q |
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||||||||||||||||||||| |
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| T |
23140421 |
gggcaatggtagaaatgataa |
23140401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 23141024 - 23140820
Alignment:
| Q |
17 |
aggaggtcaagtcaaaagccaactatgaccaaggtgaatcagatgaagatatagtagatgttctcataaaatacgaagacggaaacaacaacgaannnnn |
116 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23141024 |
aggaggccaagtcaaaagccaactatgaccaaggtgaatcagatgaagatatagtagatgttctcataaaatacgaagacggaaacaacaaagaattttt |
23140925 |
T |
|
| Q |
117 |
nnnaactaaagacaatatcaaggccataatcctggtaagaatatcttttaactggaagctgcgaaatacttcctctgtctcatattaaagttcctcttgg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23140924 |
tttaactaaagacaatatcaaggccataatcctggtaagaatatcttttaactggaagctgcgaaatacttcctctgtctcatattaaagttcctcttgg |
23140825 |
T |
|
| Q |
217 |
aaata |
221 |
Q |
| |
|
||||| |
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|
| T |
23140824 |
aaata |
23140820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 595 - 668
Target Start/End: Complemental strand, 23024704 - 23024631
Alignment:
| Q |
595 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatg |
668 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23024704 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatg |
23024631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 581 - 672
Target Start/End: Complemental strand, 23039487 - 23039396
Alignment:
| Q |
581 |
gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataa |
672 |
Q |
| |
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||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23039487 |
gaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataa |
23039396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 595 - 664
Target Start/End: Complemental strand, 23149190 - 23149121
Alignment:
| Q |
595 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtaga |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23149190 |
ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtaga |
23149121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 584 - 668
Target Start/End: Complemental strand, 23036613 - 23036529
Alignment:
| Q |
584 |
cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatg |
668 |
Q |
| |
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|||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23036613 |
cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatg |
23036529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 581 - 672
Target Start/End: Complemental strand, 23033145 - 23033054
Alignment:
| Q |
581 |
gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataa |
672 |
Q |
| |
|
||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
23033145 |
gaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataa |
23033054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 582 - 665
Target Start/End: Complemental strand, 23146365 - 23146282
Alignment:
| Q |
582 |
accttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaa |
665 |
Q |
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|
|||||| |||||| || | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23146365 |
accttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaa |
23146282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 601 - 672
Target Start/End: Complemental strand, 23017488 - 23017417
Alignment:
| Q |
601 |
ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataa |
672 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
23017488 |
ttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataa |
23017417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 23149632 - 23149494
Alignment:
| Q |
19 |
gaggtcaagtcaaaagccaactatgaccaaggtgaatcagatgaagatatagtagatgttctcataaaatacgaagacggaaacaacaacgaannnnnnn |
118 |
Q |
| |
|
|||| ||||||||||| || |||||||||| |||| ||||| ||||| | |||||||||||||||||||| ||||| || | |||||| ||| |
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| T |
23149632 |
gaggccaagtcaaaaggcagttatgaccaagctgaaacagatcaagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttct |
23149533 |
T |
|
| Q |
119 |
naactaaagacaatatcaaggccataatcctggtaagaa |
157 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||| |
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| T |
23149532 |
tgaccaaagacaatatcaaggccataatcttggtaagaa |
23149494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 601 - 668
Target Start/End: Complemental strand, 21780239 - 21780172
Alignment:
| Q |
601 |
ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatg |
668 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21780239 |
ttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatg |
21780172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 672
Target Start/End: Original strand, 6331 - 6399
Alignment:
| Q |
604 |
aggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataa |
672 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
6331 |
aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataa |
6399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 601 - 637
Target Start/End: Complemental strand, 62579 - 62543
Alignment:
| Q |
601 |
ttcaggacatttttggtgctggaggtgagacatcagc |
637 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
62579 |
ttcaggacatgtttggtgctggaggtgatacatcagc |
62543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 660
Target Start/End: Complemental strand, 12637429 - 12637365
Alignment:
| Q |
596 |
tattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatgg |
660 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||| |
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| T |
12637429 |
tatttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatgg |
12637365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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