View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14160_low_15 (Length: 238)

Name: NF14160_low_15
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14160_low_15
NF14160_low_15
[»] chr3 (3 HSPs)
chr3 (11-221)||(1779194-1779404)
chr3 (11-80)||(45307368-45307436)
chr3 (11-51)||(55204971-55205011)
[»] chr4 (6 HSPs)
chr4 (11-77)||(13772393-13772459)
chr4 (11-55)||(38720630-38720674)
chr4 (11-77)||(48372413-48372479)
chr4 (11-63)||(21037310-21037362)
chr4 (13-49)||(28464822-28464858)
chr4 (13-53)||(51020212-51020252)
[»] chr1 (2 HSPs)
chr1 (11-55)||(44645280-44645324)
chr1 (11-57)||(49129686-49129732)
[»] scaffold0068 (1 HSPs)
scaffold0068 (11-77)||(59258-59324)
[»] chr7 (1 HSPs)
chr7 (11-77)||(40400900-40400966)
[»] chr6 (1 HSPs)
chr6 (11-77)||(21802615-21802681)
[»] chr5 (3 HSPs)
chr5 (11-77)||(1406246-1406312)
chr5 (11-77)||(6029452-6029518)
chr5 (11-47)||(31850032-31850068)
[»] chr2 (3 HSPs)
chr2 (11-77)||(38910672-38910738)
chr2 (11-77)||(41078169-41078235)
chr2 (11-55)||(1366423-1366467)
[»] scaffold0340 (1 HSPs)
scaffold0340 (11-55)||(12870-12914)
[»] chr8 (1 HSPs)
chr8 (11-47)||(36016770-36016806)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 1779404 - 1779194
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaatttattcataaattggagtgagtcggtggcaacggta 110  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  1779404 atattttaatataagagaggatgtgagtgtaattcaaacttcttttatagaagaaaagtgtaatttattcataaattagagtgagtcggtggcaacggta 1779305  T
Q  111 cacatcattcgctacaatgtcgtgataaaacttctcgctataattaatagcattatcctaaaatgtatgatcatcttgataagagacgagagcattgaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779304 cacatcattcgctacaatgtcgtgataaaacttctcgctataattaatagcattatcctaaaatgtatgatcatcttgataagagacgagagcattgaat 1779205  T
Q  211 acaatgaaccc 221  Q
    |||||||||||    
T  1779204 acaatgaaccc 1779194  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 45307368 - 45307436
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaatttattc 80  Q
    ||||||||||||||||| ||| | || |||| || |||| ||||| | ||||||||||||||||||||||    
T  45307368 atattttaacataagag-ggaggagagtgtagtttaaacatctttgagagaaggaaagtgtaatttattc 45307436  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 55204971 - 55205011
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaactt 51  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  55204971 atattttaacataaaagaggatgtgagtgtaattcaaactt 55205011  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 13772393 - 13772459
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||||||||| || |||||||||||| ||||| | ||||||  |||||||||||    
T  13772393 atattttaacataagagaggatgagagtgtaattcaaacatctttaagagaaggggagtgtaattta 13772459  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 38720630 - 38720674
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttt 55  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  38720630 atattttaacataagagaggatgagagtgtaattcaaacatcttt 38720674  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 48372479 - 48372413
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||| ||| |||| |||||||||||| ||||| |  | |||| |||||||||||    
T  48372479 atattttaacataagaggggaggcgaatgtaattcaaacatctttgaggggaggagagtgtaattta 48372413  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 21037362 - 21037310
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaag 63  Q
    ||||||||||||||||||||| | || |||||||||| ||||| ||| |||||    
T  21037362 atattttaacataagagaggaggggagtgtaattcaagcttctcttaaagaag 21037310  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 28464822 - 28464858
Alignment:
Q  13 attttaacataagagaggatgcgattgtaattcaaac 49  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  28464822 attttaacataagaggggatgagattgtaattcaaac 28464858  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 51020212 - 51020252
Alignment:
Q  13 attttaacataagagaggatgcgattgtaattcaaacttct 53  Q
    |||||||||||| |||||| | |||||||||||||||||||    
T  51020212 attttaacataaaagaggacgtgattgtaattcaaacttct 51020252  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 44645324 - 44645280
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttt 55  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  44645324 atattttaacataagagaggatgagagtgtaattcaaacatcttt 44645280  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 49129686 - 49129732
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttctttta 57  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||||    
T  49129686 atattttaacataagaggggaggggagtgtaattcaaacttctttta 49129732  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 59324 - 59258
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||| ||| | || |||||||||| | ||||||| || |||| |||||||||||    
T  59324 atattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaattta 59258  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 40400966 - 40400900
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||| ||||| || |||||||||| | ||||| |  ||||| ||||||||||||    
T  40400966 atattttaacataagaggggatgagagtgtaattcaagcatctttgagggaagggaagtgtaattta 40400900  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 21802615 - 21802681
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||| ||| | || |||||||||| | ||||||| || |||| |||||||||||    
T  21802615 atattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaattta 21802681  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 1406246 - 1406312
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    |||||||||||||||||  |||| || |||||||||| ||||| ||| ||||||  |||||||||||    
T  1406246 atattttaacataagaggagatgagagtgtaattcaagcttctcttagagaaggggagtgtaattta 1406312  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 6029518 - 6029452
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||||||||| || |||||||||| | ||||| |  | ||| ||||||||||||    
T  6029518 atattttaacataagagaggatgagagtgtaattcaagcatctttgaggggagggaagtgtaattta 6029452  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 31850068 - 31850032
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaa 47  Q
    ||||||||||||||||||||||| || ||||||||||    
T  31850068 atattttaacataagagaggatgagagtgtaattcaa 31850032  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 38910738 - 38910672
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||||||| | || |||||||||||| ||||| | || ||| || |||||||||    
T  38910738 atattttaacataagagaggaggggagtgtaattcaaacatctttaagaggagggaaatgtaattta 38910672  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 41078169 - 41078235
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttttatagaaggaaagtgtaattta 77  Q
    ||||||||||||||||||||| | || |||| ||||||| ||||  |||| ||| ||||||||||||    
T  41078169 atattttaacataagagaggaggagagtgtagttcaaacatcttgaataggagggaagtgtaattta 41078235  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 1366423 - 1366467
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttt 55  Q
    ||||||||||||||||||||| | || |||||||||||| |||||    
T  1366423 atattttaacataagagaggaggagagtgtaattcaaacatcttt 1366467  T

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Target: scaffold0340 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 12870 - 12914
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaaacttcttt 55  Q
    ||||||||||||||||||||| | || |||||||||||| |||||    
T  12870 atattttaacataagagaggaagagagtgtaattcaaacatcttt 12914  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 36016770 - 36016806
Alignment:
Q  11 atattttaacataagagaggatgcgattgtaattcaa 47  Q
    ||||||||||||||||||||| | |||||||||||||    
T  36016770 atattttaacataagagaggaggggattgtaattcaa 36016806  T

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