View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_16 (Length: 237)
Name: NF14160_low_16
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_16 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15051936 - 15051716
Alignment:
| Q |
1 |
aatgttataccagctgggagagatatataattatttatcattacatgattaatttcgttgcatactattgaagtcatctttctgttagtaagattaacaa |
100 |
Q |
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| T |
15051936 |
aatgttataccagctgggagagatatataattatttatgattacatgattaatttcgttgcatactattgaagtcaactttctgttagtaagattaacaa |
15051837 |
T |
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| Q |
101 |
tctaatcaataacaatatagtaagatactctttgcatgaagacaaatggatttgcatgacattgtgggaaaaattagacagaatcattataaataataaa |
200 |
Q |
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| T |
15051836 |
tctaatcaataacgatatagtaagatactctttgcatgaagacaaatggatttgcatgacattgtgggaaaaattagacagaatcattataaataataaa |
15051737 |
T |
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| Q |
201 |
atcaaacacaaatataaacac |
221 |
Q |
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| T |
15051736 |
atcaaacacaaatataaacac |
15051716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 13032927 - 13032855
Alignment:
| Q |
47 |
gattaatttcgttgcatactattgaagtcatctttctgttagtaagattaacaatctaatcaataacaatata |
119 |
Q |
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| T |
13032927 |
gattaatttcgctgtatactcatgaagtcaactttctgttagtaagattaacaatccaatcaacaacgatata |
13032855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 6055023 - 6055074
Alignment:
| Q |
167 |
ggaaaaattagaca--gaatcattataaataataaaatcaaacacaaatataa |
217 |
Q |
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| T |
6055023 |
ggaaaaattagacatagaatcattataaataat-aaatcaaacacaaacataa |
6055074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 156310 - 156345
Alignment:
| Q |
181 |
gaatcattataaataataaaatcaaacacaaatataa |
217 |
Q |
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| T |
156310 |
gaatcattataaataat-aaatcaaacacaaatataa |
156345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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