View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_18 (Length: 228)
Name: NF14160_low_18
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 1844272 - 1844121
Alignment:
| Q |
20 |
gcactcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctgggaaaagatttttaaaatcaaaacaat |
119 |
Q |
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| T |
1844272 |
gcactcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatatgggaaaagatttttaaaatcaaaacaat |
1844173 |
T |
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| Q |
120 |
atccatatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
171 |
Q |
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| T |
1844172 |
atccatatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
1844121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 1838967 - 1839115
Alignment:
| Q |
23 |
ctcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctgggaaaagatttttaaaatcaaaacaatatc |
122 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
1838967 |
ctcctatagaaccttctcaaactcttttctttagttactaatatgcaggttgatgagggaactgtatctgggaagagatttttaaaatcaaaacaatatc |
1839066 |
T |
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| Q |
123 |
catatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
171 |
Q |
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| T |
1839067 |
catatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
1839115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 41381550 - 41381400
Alignment:
| Q |
21 |
cactcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctgggaaaagatttttaaaatcaaaacaata |
120 |
Q |
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| T |
41381550 |
cactccaatagaaccttctcaagctcttttcttcagttactaatatgcaggttgatgagggaactgtatatgggaagaaatttttaaaatcaaaacaata |
41381451 |
T |
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| Q |
121 |
tccatatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
171 |
Q |
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| T |
41381450 |
cccatatgctcagatctacgagtattcaaaatgtaagctttatattctgaa |
41381400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 1843889 - 1843847
Alignment:
| Q |
177 |
tataggttacctaattaaagtattattgtgatctgtgctgctc |
219 |
Q |
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| T |
1843889 |
tataggttacctaattaaagtattattgtgatctttgttgctc |
1843847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 1839322 - 1839364
Alignment:
| Q |
177 |
tataggttacctaattaaagtattattgtgatctgtgctgctc |
219 |
Q |
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| T |
1839322 |
tataggttacctaattaatgtattattgtgatctttgttgctc |
1839364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 18633638 - 18633789
Alignment:
| Q |
20 |
gcactcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctgggaaaagatttttaaaatcaaaacaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18633638 |
gcactcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctaggaaaagatttttaaaatcaaaacaat |
18633737 |
T |
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| Q |
120 |
atccatatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
171 |
Q |
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| T |
18633738 |
atccatatgatcagatctatgagtattcaaaatgtaagctgcatattctgaa |
18633789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 18638460 - 18638312
Alignment:
| Q |
23 |
ctcctatagaaccttctcaagctcttttctttagttactaatatgcaggttgatgagggaattatatctgggaaaagatttttaaaatcaaaacaatatc |
122 |
Q |
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|||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
18638460 |
ctcctatagaaccttctcaaactctttttttcagttactaatatgcaggttgatgagggaactgtatctgggaagagatttttaaaatcaaaacaatatc |
18638361 |
T |
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| Q |
123 |
catatgctcagatctatgagtattcaaaatgtaagctgcatattctgaa |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18638360 |
catatgctcagatctatgagtattcaaaatgtgagctgcatattctgaa |
18638312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 18634019 - 18634062
Alignment:
| Q |
176 |
atataggttacctaattaaagtattattgtgatctgtgctgctc |
219 |
Q |
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|||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
18634019 |
atataggttacctaattaaagtattattatgatctttgttgctc |
18634062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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