View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_22 (Length: 222)
Name: NF14160_low_22
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 3255993 - 3256185
Alignment:
| Q |
13 |
ataattctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtcatgttgttcttatttagctttgtaacaaaaaactatt |
112 |
Q |
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| T |
3255993 |
ataattctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtcatgttgttcttatttagctttgtaacaaaaaaatatt |
3256092 |
T |
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| Q |
113 |
tgcgtttttaattacaacggttgaatatgtatgttcaatgtttaatcttgagcaaaaacgaacacatgttggaactatgcttgcgttagtttt |
205 |
Q |
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| T |
3256093 |
tgcgtttttaattacaacggtcgaatatgcatgttcaatgtttaatcttgagcaaaaacgaacacatgttggaactatgcttgcgttagtttt |
3256185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 3274099 - 3274170
Alignment:
| Q |
124 |
ttacaacggttgaatatgtatgtt-caatgtttaatcttgagcaaaaacgaacacatgttggaactatgctt |
194 |
Q |
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| T |
3274099 |
ttacaacggttaaaaatgtatgtagcaatttttaatcttgagcataaacgaacacatgttggaactctgctt |
3274170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 18302262 - 18302202
Alignment:
| Q |
16 |
attctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtca |
76 |
Q |
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| T |
18302262 |
attctgttgatacattcgagtaattaaacgttttacaattagtaaactatatttactgtca |
18302202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 6944828 - 6944888
Alignment:
| Q |
16 |
attctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtca |
76 |
Q |
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| T |
6944828 |
attctgttgatacattcgagtaattaaacgttttacaattagtaaactatatttactgtca |
6944888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 48942834 - 48942774
Alignment:
| Q |
16 |
attctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtca |
76 |
Q |
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|||||| |||||||||| |||| || ||| |||||||| |||||||||||||||||||||| |
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| T |
48942834 |
attctgttgatacattcgagtaattaaacgttttacaattagtaaactatatttactgtca |
48942774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 13234428 - 13234368
Alignment:
| Q |
16 |
attctgctgatacattcaagtagttgaacattttacaagtagtaaactatatttactgtca |
76 |
Q |
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|||||| |||||||||| |||| || ||| |||||||| |||||||||||||||||||||| |
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| T |
13234428 |
attctgttgatacattcgagtaattaaacgttttacaattagtaaactatatttactgtca |
13234368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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