View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_23 (Length: 207)
Name: NF14160_low_23
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 9474950 - 9475123
Alignment:
| Q |
19 |
tgaatctcatgtaaacatttactatcttttaccaatcaatacaaattctaaagagtttttctctctatcaagctctcaaatttaattttctactagacaa |
118 |
Q |
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| T |
9474950 |
tgaatctcatgtaaacatttactatcttttaccaatcaatacaaattctaaagagtttttctctctatcaagctctcaaatttaattttctactagataa |
9475049 |
T |
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| Q |
119 |
atcttgatctctttgatcatatgatttataacacaagctgttatttttcgtgatgagcaattgaaaacgttgat |
192 |
Q |
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| T |
9475050 |
atcttgatctctttgatcatatgatttataacacaagctgttatttttcgtgatgagcaattgaaaaagttgat |
9475123 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 43036903 - 43036979
Alignment:
| Q |
70 |
agagtttttctctctatcaagctctcaaatttaatttt-ctactagacaaatcttgatctctttgatcatatgattt |
145 |
Q |
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| T |
43036903 |
agagtttttctctctaacaagctctcaatcttatttttcctacgagatgaatcttcatctctttgatcgtgtgattt |
43036979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 38511799 - 38511743
Alignment:
| Q |
52 |
aatcaatacaaattctaaagagtttttctctctatcaagctctcaaatttaattttc |
108 |
Q |
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| T |
38511799 |
aatcaataccaattctaatgagcttttctctctatcgagttctcaagtttatttttc |
38511743 |
T |
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