View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_3 (Length: 528)
Name: NF14160_low_3
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 43281861 - 43281351
Alignment:
| Q |
20 |
tagtactatatgctaagctttattgttgcta--cttgctatgcttcggagaaaacataaactgcattgttaatgtattttgacccaattaaattgtacta |
117 |
Q |
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| T |
43281861 |
tagtagtatatgctaagctttattgttgctatacttgctatgcttcggagaaaacataaactgcattgttaatgtattttgacccaattacattgtacta |
43281762 |
T |
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| Q |
118 |
tgatcggggtgttattccttgtggagtcacacatgctctttaattcgaaagttgacttttaattaacaaaggannnnnnnnggaactacaagtacaagac |
217 |
Q |
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| T |
43281761 |
tgatcgaggtgttattccttgtggagtcacacatgctctttaattcgaaagttgacttttaattaacaaaggattttttttggaactacaagtacaagac |
43281662 |
T |
|
| Q |
218 |
tggtatttatacgctaaagtgtttcacataagctaaattttgctagcattaacagttaaacacttacaggtagatgtataatataaataaataaggaaaa |
317 |
Q |
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| T |
43281661 |
tggtatttatacgctaaagtgtttcacataagctaagttttgctagcattaacagttaaacacttacaggtagatgtataatataaataa----ggaaaa |
43281566 |
T |
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| Q |
318 |
atgttaacttgtgcttttagggtataagttaaaaggctaaatgtaaagtgtctcttctatctaagcctcaattctcgcttaagcgttttcatatctgtct |
417 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
43281565 |
atgttaacttgtgctcttagggcataagttaaaaggctaaatgtaaagtgtctcttctatctaagcctcaatttttgcttaagcgttttcatatttgtct |
43281466 |
T |
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| Q |
418 |
gttgacaatggattaattatgttaatatgattac-------taac-------attttctactaacattttctcctaaatatatcaaattttgttgatcca |
503 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
43281465 |
gttgacaatggattaattatgttaatatgattaccatggagtaaccatgctaatttgctactaacattttctcctaaatacatcaacttttgttgatcca |
43281366 |
T |
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| Q |
504 |
tttttatagtatatt |
518 |
Q |
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| T |
43281365 |
tttttatagtatatt |
43281351 |
T |
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