View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14160_low_5 (Length: 398)
Name: NF14160_low_5
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 25669392 - 25669760
Alignment:
| Q |
15 |
gggttaattttgacgagcatcgttggtggttgcgtttgcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatata |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| || |
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| T |
25669392 |
gggttaattttgacgagcatcgttggtggttacgtttgcaagtgtccactcgtccaacaaatgatgagttgtatcaactacatgcgcagctatttatgta |
25669491 |
T |
|
| Q |
115 |
acatcatcctacactttgaggtagtggtgcttccaaaaactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25669492 |
acatcatcctacactttgaggtagtggtgcttccagaaactccaaagcaaactagccatacaagcatccagttctggcgtgaaacgttataacaacaaaa |
25669591 |
T |
|
| Q |
215 |
agaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25669592 |
agaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaag |
25669691 |
T |
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| Q |
315 |
aaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttt |
383 |
Q |
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| T |
25669692 |
aaacatgtgagccaaatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttt |
25669760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 25827857 - 25828232
Alignment:
| Q |
7 |
gtagcatagggttaattttgacgagcatcgttggtggttgcgtttgcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaacta |
106 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
25827857 |
gtagcatggggctaattttgacgagcatcggtggtggttgcgtttgcaagtgtccactcctccaacaaatgatgagctttatcaactacttgagcaacta |
25827956 |
T |
|
| Q |
107 |
tttatataacatcatcctacactttgaggtagtggtgcttccaaaaactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataa |
206 |
Q |
| |
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| | | |||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||| | |||| |||||||||||||||| ||| |
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| T |
25827957 |
tctttttaacatcatcctacactttgaggtagtg-tgcttccgtaaactccgaaacaaactagccatacaagtagccagttctggcgtgaaacgttgtaa |
25828055 |
T |
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| Q |
207 |
caacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatggg |
306 |
Q |
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|||||||||| | ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| | |||| ||||||||||| ||||||||||||| |
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| T |
25828056 |
aaacaaaaagatcgattttgcttccaaactactatcactgacaatctattgaatgtcgttccaaaggacagccataatccaaacttacattgtaaatggg |
25828155 |
T |
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| Q |
307 |
caagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttt |
383 |
Q |
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||||||| |||||||||||||| |||||||||| |||||||||||| |||||||| || ||||| |||||||||||| |
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| T |
25828156 |
caagtaaaaaacatgtgagccatatcctaatcataagaaacacaaccaacacactctaaagggcattggacaccttt |
25828232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 25472105 - 25472437
Alignment:
| Q |
19 |
taattttgacgagcatcgttggtggttgcgtttgcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| ||||||| ||| | | |||||| |
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| T |
25472105 |
taattttgacgagcatcgttggtggttgcgtttgcaagtgtccactcctacaacaaatgatgagctttaccaactacttgagcaattatctttgtaacat |
25472204 |
T |
|
| Q |
119 |
catcctacactttgaggtagtggtgcttccaaaaactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagac |
218 |
Q |
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||| ||||| |||| || || |||||||| | |||||||||||||||||||||||||||| | |||| ||||| ||||||| || ||| ||||||||| |
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| T |
25472205 |
cattctacattttgtggcagcggtgcttcgataaactccaaagcaaactagccatacaagtagccagttctggtgtgaaacattgtaattacaaaaagat |
25472304 |
T |
|
| Q |
219 |
caattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaac |
318 |
Q |
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| |||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||| | || |
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| T |
25472305 |
c---------gccaaactagtgtcattgacaatctattgaatgttgttccaaaggccagccagaa-ccaaacttgcaatgtaaatgggcaagtaaaagac |
25472394 |
T |
|
| Q |
319 |
atgtgagccagatcctaatcagaagaaacacaactaacacact |
361 |
Q |
| |
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| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
25472395 |
aagtgagccaaatcctaattagaagaaacacaactaacacact |
25472437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 187 - 383
Target Start/End: Original strand, 25429567 - 25429763
Alignment:
| Q |
187 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
286 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
25429567 |
tctgccgtgaaacgttgtaacaacaaaaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
25429666 |
T |
|
| Q |
287 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttt |
383 |
Q |
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||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
25429667 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggcattggacaccttt |
25429763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 383
Target Start/End: Complemental strand, 24889345 - 24889149
Alignment:
| Q |
187 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
286 |
Q |
| |
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|||| ||||||||||| |||||||| ||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
24889345 |
tctgccgtgaaacgttgtaacaacataaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
24889246 |
T |
|
| Q |
287 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttt |
383 |
Q |
| |
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||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
24889245 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggtattggacaccttt |
24889149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 25984096 - 25983908
Alignment:
| Q |
29 |
gagcatcgttggtggttgcgtttgcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacac |
128 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| | | | | |||||||||| |||| |
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| T |
25984096 |
gagcaacgttggtggctgcgtttgcaaatgtccactcttccaacaaatgatgagttgtatcaactacttgagcagttgtctctgtaacatcatctcacac |
25983997 |
T |
|
| Q |
129 |
tttgaggtagtggtgcttccaaaaactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaaga |
217 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| ||| ||| |||| | |||| ||||||| ||||||||||||| ||| |||||||||| |
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| T |
25983996 |
tttgaggttgtggtacttccataaactccaaaacaagctaaccatgcgagcagccagctcaggcgtgaaacgttgtaataacaaaaaga |
25983908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 41837475 - 41837399
Alignment:
| Q |
294 |
cattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggc |
370 |
Q |
| |
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||||| |||||||||||||| ||||||| ||| || |||| ||| ||||| ||||||||||||| ||| |||||| |
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| T |
41837475 |
cattgcaaatgggcaagtaaaaaacatgcgagtcaagtcctcatcgaaagaatcacaactaacacaatttgtagggc |
41837399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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