View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14160_low_9 (Length: 267)
Name: NF14160_low_9
Description: NF14160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14160_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2885764 - 2885992
Alignment:
| Q |
1 |
ttgtttgagacgctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2885764 |
ttgtttgagacgctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgtaaatttgtgtttgtagttttcaacaaacttacga |
2885863 |
T |
|
| Q |
101 |
agatcagatgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885864 |
agatcagatgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgcca |
2885963 |
T |
|
| Q |
201 |
tctctaatacttagaaacgattgtgccta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2885964 |
tctctaatacttagaaacgattgtgccta |
2885992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2866577 - 2866806
Alignment:
| Q |
1 |
ttgtttgagacgctcgcccgatgattcattgaaagttatttggatgt-aaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacg |
99 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||| |||| |||||||| ||| ||||||||||||||| | |
|
|
| T |
2866577 |
ttgtttgagacgctcgtccgatgattcataaaaagttatttggacgttaaggggacataaggtctgtaaatttgttcatgtgcttttcaacaaacttatg |
2866676 |
T |
|
| Q |
100 |
aagatcagatgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgcc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866677 |
aagatcagatgggcagaattgctcatacatggcataaagaaacattaggctagcggcaattgagcctaattgtgacaatatttccccaattcccattgcc |
2866776 |
T |
|
| Q |
200 |
atctctaatacttagaaacgattgtgccta |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
2866777 |
atctctaatacttagaaactattgtgccta |
2866806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2861198 - 2861380
Alignment:
| Q |
1 |
ttgtttgagacgctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||| |||||||| ||| ||||||||||||||| || |
|
|
| T |
2861198 |
ttgtttgagacgctcgcccgatgattcataaaaagttatttcgacgtaaggggacataaggtctgtaaatttgttcatgtgcttttcaacaaacttatga |
2861297 |
T |
|
| Q |
101 |
agatcagatgggcagaattgctcatacatggcataaac--aaacataaggctagccgcaattgagcctaattgtgacaatatt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861298 |
agatcagatgggcagaattgctcatacatggcataaacaaaaacattaggctagccgcaattgagcctaattgtgacaatatt |
2861380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 2910642 - 2910744
Alignment:
| Q |
31 |
gaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacgaagatcagatgggcagaattgctcatacatg |
130 |
Q |
| |
|
|||| |||||||| ||| |||||||||||| ||| |||||||||| | || ||| |||||| ||||||||||||| ||||||||||||||||||| | |
|
|
| T |
2910642 |
gaaacttatttggctgtgaggggacataaggtctacaaatttgtgcgtttattttcgaacaaatctacgaagatcagaagggcagaattgctcatacaag |
2910741 |
T |
|
| Q |
131 |
gca |
133 |
Q |
| |
|
||| |
|
|
| T |
2910742 |
gca |
2910744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 2841611 - 2841525
Alignment:
| Q |
109 |
tgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccat |
195 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||||| | ||||||| |||||||||| | |||| ||||||||| ||||||||| |
|
|
| T |
2841611 |
tgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagcctaggtttgaccatatttccctaattcccat |
2841525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University