View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14161_low_1 (Length: 559)
Name: NF14161_low_1
Description: NF14161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14161_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 320 - 514
Target Start/End: Complemental strand, 3744846 - 3744654
Alignment:
| Q |
320 |
ttattcaataataataactttaatattttga--------catatacaacaatgacatgtagtttgatgaaaaatagttaatatcagttaatatcaactgt |
411 |
Q |
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| T |
3744846 |
ttattcaataataataactttaatattttgaatatttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatatca----------actgt |
3744757 |
T |
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| Q |
412 |
gacatccgtaaccattttctaagcagattttctaaagttcgaaaccaaacgtnnnnnnnnnnnnntacaatgggtagagagagagctatctatctattta |
511 |
Q |
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| T |
3744756 |
gacatccgtaaccattttctaagcagattttctaaagtttgaaaccaaacgtaaaaaataaaaaatacaatgggtagagagagagctatctatctattta |
3744657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 3745030 - 3744891
Alignment:
| Q |
20 |
actctaaaccctaaaaccttaaacctaatgaatgcaata--tatagaaggctgatatatctgattatnnnnnnnnnnnnnnnnnnnnnnngggctagtaa |
117 |
Q |
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| T |
3745030 |
actctaaaccctaaaaccttaaacctaacgaatgcaatatatatagaaggctgatatatctgattataaaaaataaaaataaaaataaaagggctagtaa |
3744931 |
T |
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| Q |
118 |
cgagtgtttttgttttatgttatcttcgcatatctttctt |
157 |
Q |
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| T |
3744930 |
cgagtgtttttgttttatgttatcttcgcatatctttctt |
3744891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 551
Target Start/End: Complemental strand, 3734450 - 3734407
Alignment:
| Q |
508 |
tttatatacaaacttgagctatatattctaagttctgatgatgt |
551 |
Q |
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| T |
3734450 |
tttatatacaaacttgagctatatattctaagttatgatgatgt |
3734407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 3753681 - 3753645
Alignment:
| Q |
28 |
ccctaaaaccttaaacctaatgaatgcaatatataga |
64 |
Q |
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| T |
3753681 |
ccctaaaatcttaaacctagtgaatgcaatatataga |
3753645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 394
Target Start/End: Original strand, 23976449 - 23976514
Alignment:
| Q |
329 |
aataataactttaatattttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatat |
394 |
Q |
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| T |
23976449 |
aataatgactttcatattttgacatatacaacactaacatgtagtttagcgaataatagttaatat |
23976514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 11372361 - 11372315
Alignment:
| Q |
329 |
aataataactttaatattttgacatatacaacaatgacatgtagttt |
375 |
Q |
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| T |
11372361 |
aataatgacttttatattttgacatatacaacattaacatgtagttt |
11372315 |
T |
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