View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14161_low_2 (Length: 438)
Name: NF14161_low_2
Description: NF14161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14161_low_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 33920691 - 33921140
Alignment:
| Q |
7 |
tttttgtcttcaagtgaatcgaacgttggagtataaattaagataatgaggtagatcttacaaataagttgccacatattgtacataaggtacaaaattc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33920691 |
tttttgtcttcaagtgaatcgaacgttggagtataaattaagataatgaggtagatcttacaaataagttgccacat--tgtacataaggtacaaaattc |
33920788 |
T |
|
| Q |
107 |
ttgttatggacagtttttaaatcgtacaattttgctac---------acatgatagagaccgacactcatcgtatcttaatcacttt------------a |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33920789 |
ctgttatggacagtttttaaatcgtacaattttgctactagtttctcacatgatagagaccgacactcatcgtatcttaatcactttctctctcacttta |
33920888 |
T |
|
| Q |
186 |
tacgtaaattgttaatacattannnnnnnngtaagtaaaaggaaaattttaatttaattaattttctctgaagacatgtcaatttgcttggtaaggggcc |
285 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33920889 |
taagtaaattgttaatacattattatttt-gtaagtaaaaggaaaattttaatttaattaattttctctgaagaaatgtcaatttgcttggtaaggggcc |
33920987 |
T |
|
| Q |
286 |
acctatttagggtagaggctagactatggacaaaccaattcgatttttctttttaaaaaacagcaaaagaggtatgtagcatttgagaggggtagtatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33920988 |
acctatttagggtagaggctagactatggacaagccaattcgatttttctttttaaaaaacagcaaaagaggtatgtagcatttgagagggggagtatta |
33921087 |
T |
|
| Q |
386 |
tccataaccaaatacaaatgtgatgcctaagaagaacaagagaaacatgaact |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33921088 |
tccataaccaaatacaaatgtgatgcctaagaagaacaagagaaacatgaact |
33921140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University