View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14161_low_3 (Length: 424)
Name: NF14161_low_3
Description: NF14161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14161_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 43555679 - 43555289
Alignment:
| Q |
12 |
catcatcatcaaatggcagaagcacgttctaatgaatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
111 |
Q |
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| T |
43555679 |
catcatcatcaaatggcagaagcacgttctaatgtatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
43555580 |
T |
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| Q |
112 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaagccataactaagattgaatctca |
211 |
Q |
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| T |
43555579 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaatccataactaagattgaatctca |
43555480 |
T |
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| Q |
212 |
tcagccaaagaatcatcattatgagatgaagaaatttcgatctcttaatgatgtttacatggaggctgcccccaaatgtagcagaaagagtatcaattgc |
311 |
Q |
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| T |
43555479 |
tcagccaaagaatcatcattatgagatgaagaaatttcgatctcttaatgatgtttacatggaggctgcccccaaatgtagcagaaagagtatcaattgc |
43555380 |
T |
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| Q |
312 |
aagaggaagaagacaacattggaggaagaaaaggctgataaaagaataattatcaaatccataactaagattgaatcatctcaggcaaaca |
402 |
Q |
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| T |
43555379 |
aagaggaataagacaacattggaggaagaaaaggctgataaaagaataattatcaaatccataactaagattgaatcatctcaggcaaaca |
43555289 |
T |
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