View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_high_11 (Length: 307)
Name: NF14162_high_11
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 25088819 - 25089097
Alignment:
| Q |
12 |
aagaatattaataaatgtaacttaaaaattagaaaatatgtggctagattttaatcacattctatgggtactctatattatcgatgtttctttctaataa |
111 |
Q |
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| T |
25088819 |
aagaaaattaataaatgtaacttaaaaattagaaaatatgtggctagattttactcacattctatgggtactctatattatcgatgtttctttctaataa |
25088918 |
T |
|
| Q |
112 |
gaactgataagttcatatgtattctctctggtctcaattataactaaa-nnnnnnnnnnnnaaattcatttaataaataatatatatgtggtatatagtc |
210 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||| ||||||| |
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| T |
25088919 |
gaactgatgagttcatatgtaatctctctggtctcaattataagtaaatttttatttttttaaatttatttaataaat--tatatatgtggtctatagtc |
25089016 |
T |
|
| Q |
211 |
tctttagatcatatacatcatttattgaatgaatgtgtaaagattaaaaatttgtttataatttggacggagagagtataa |
291 |
Q |
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| | |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
25089017 |
tatgtagaccatatacatcatttattgaatgaatgtgtaaaaattaaaaatttgcttataatttggacggagagagtataa |
25089097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 10983915 - 10983886
Alignment:
| Q |
215 |
tagatcatatacatcatttattgaatgaat |
244 |
Q |
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| T |
10983915 |
tagatcatatacatcatttattgaatgaat |
10983886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 27165238 - 27165267
Alignment:
| Q |
215 |
tagatcatatacatcatttattgaatgaat |
244 |
Q |
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| T |
27165238 |
tagatcatatacatcatttattgaatgaat |
27165267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 43893184 - 43893156
Alignment:
| Q |
215 |
tagatcatatacatcatttattgaatgaa |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43893184 |
tagatcatatacatcatttattgaatgaa |
43893156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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