View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_high_7 (Length: 418)
Name: NF14162_high_7
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 37618527 - 37618879
Alignment:
| Q |
16 |
attacaaatttcatacttctttctgtctattactaagttataagaaatactacatttcataactagtttatttgatttgtttaggtggtggaaagagttg |
115 |
Q |
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| T |
37618527 |
attacaaatttcatacttctttctgtctattactatgttataagaaatgctacatttcataactagtttatttgatttgtttaggtggtggaaagagttg |
37618626 |
T |
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| Q |
116 |
ggacttgttgaaaaacttggttttgcaagagatagaccaacagagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgca |
215 |
Q |
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| T |
37618627 |
ggacttgttgaaaaacttggttttgcaagagatagaccaacagagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgca |
37618726 |
T |
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| Q |
216 |
tagaacttacaaaaaccatatgtattttgctagttatggatgatatctttgacacttatggaacattagatgaacttgttctttttacaaaggcaattaa |
315 |
Q |
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| T |
37618727 |
tagaacttacaaaaaccatatgtattttgctagtaatggatgatatctttgacacttatggaacattagatgaacttgttctttttacaaaggcaattaa |
37618826 |
T |
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| Q |
316 |
aaggtacgcttctatagattttgtatgtatttaaacttgattaacgatagaaa |
368 |
Q |
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| T |
37618827 |
aaggtacgcttctatagattttgtatgtatttaaacttaattaacgatagaaa |
37618879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 58 - 360
Target Start/End: Original strand, 37626982 - 37627285
Alignment:
| Q |
58 |
agaaatactacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
156 |
Q |
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| T |
37626982 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagatagaccaac |
37627081 |
T |
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| Q |
157 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagttatggat |
256 |
Q |
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| T |
37627082 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
37627181 |
T |
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| Q |
257 |
gatatctttgacacttatggaacattagatgaacttgttctttttacaaaggcaattaaaaggtacgcttctatagattttgtatgtatttaaacttgat |
356 |
Q |
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| T |
37627182 |
gacatctttgacaattatggtacattagaggatcttgttcttttcacaaaggcaattaaaaggtttgcttcagtagaatttgtatgtatttaatcttgat |
37627281 |
T |
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| Q |
357 |
taac |
360 |
Q |
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|||| |
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| T |
37627282 |
taac |
37627285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 37618902 - 37618935
Alignment:
| Q |
369 |
aaactgaactttatgttttgcaggtgggaccttg |
402 |
Q |
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| T |
37618902 |
aaactgaactttatgttttgcaggtgggaccttg |
37618935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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