View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_low_11 (Length: 477)
Name: NF14162_low_11
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 51190540 - 51190987
Alignment:
| Q |
14 |
atatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttcggcaacaatctcagaatct |
113 |
Q |
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| T |
51190540 |
atatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttcggcaacaatctcagaatct |
51190639 |
T |
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| Q |
114 |
cctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaattacttt |
213 |
Q |
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| T |
51190640 |
cctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaattacttt |
51190739 |
T |
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| Q |
214 |
ttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaagatgaataggagtaacacga |
313 |
Q |
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| T |
51190740 |
ttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaagatgaataggagtaacacga |
51190839 |
T |
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| Q |
314 |
cagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttggagtaacaccttttggtaact |
413 |
Q |
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| T |
51190840 |
cagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttggagtaacaccttttggtaact |
51190939 |
T |
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| Q |
414 |
ctgccatgttctgtgtttctctattttcttgcccttgagtgtttaaga |
461 |
Q |
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| T |
51190940 |
ctgccatgttctgtgtttctctattttcttgcccttgagtgtttaaga |
51190987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 33512540 - 33512353
Alignment:
| Q |
20 |
ctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttcggcaacaatctcagaatctcctcgt |
119 |
Q |
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||||||| ||||||| | ||||| | |||||||| | |||||||||| |||||||||||||| || ||||| || |||||||| | ||| || || |
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| T |
33512540 |
ctgcaaataggacaacttgagtgtttctcaagccaatgatcaatacaatcaatatgaaaagcatgtttacattttggtaacaatcttaaaatttctatgt |
33512441 |
T |
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| Q |
120 |
cttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaat |
207 |
Q |
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| T |
33512440 |
cttcgaatttcgacaaacatattgaacattccaacccttgttttgaacctttgagagaagagaatttgaaaaaaggaagtgattcaat |
33512353 |
T |
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