View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_low_12 (Length: 445)
Name: NF14162_low_12
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 24313426 - 24313157
Alignment:
| Q |
25 |
tgatttagtgatgaatcttctaagctttccacggtgttgaatataacacccaaaggtgttattgaaagtgttttagctatgctttgtagaaaatcatgtt |
124 |
Q |
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| T |
24313426 |
tgatttagtgatgaatcttctaagctttccacggtgttgaatataacacccaaaggtgttattgaaagtgttttacctatgctttgtaaaaaatcatatt |
24313327 |
T |
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| Q |
125 |
gatttttcaaattgaaaaggggtagatctttgaatcgcagcaagtccagttctggcaccaagtcccttgactttgaatctgtaatacatgcaacatgtta |
224 |
Q |
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| T |
24313326 |
gatttgtcaaattaaaaaggggtagatctttgaatcgcagcaagtccagttctggcaccaagtcccttgactttgaatctgtaatacatgcaatatgtta |
24313227 |
T |
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| Q |
225 |
aatagtcattcgtgtaaaaataaataaataattcaacaattaatttattattatgatacgtgtgaagtta |
294 |
Q |
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| T |
24313226 |
aatagtcattcgtgtaaaaataaataaataattcaacaattaattaattactatgattcgtgtgaagtta |
24313157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 24313028 - 24312939
Alignment:
| Q |
300 |
tttatggttatgatatcattttcttgagcgtgaatgtgaacagaaaaaagccacttcaagctaattaaacatgaggaatctttcgggagg |
389 |
Q |
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| T |
24313028 |
tttatggttatggtatcattttcttgagcgtgaatgtgaacagaaaaaagctacttcaaggtcattaaacatgaggaatctttcgggagg |
24312939 |
T |
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