View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_low_14 (Length: 374)
Name: NF14162_low_14
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 14734522 - 14734870
Alignment:
| Q |
17 |
ataaaggataaatcataaatggctggaattatcaagaatattttgcactttttatcggccttctcaattattatatnnnnnnncaccgacatagacacac |
116 |
Q |
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| T |
14734522 |
ataaaggataaatcataaatggctggaattatcaagaatattttgcactttttatcggccttctcaattattatatacgaaaacatcgacatagacacac |
14734621 |
T |
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| Q |
117 |
gacacgacattcacaccagtatttctacactagctagtaataatttttgagagaatgatggaattaaatttaatcactcttaaagtgttagatactgaca |
216 |
Q |
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| T |
14734622 |
gatacgacattcacaccggtacttccacactagttagtaataatttttgagagaatgatggaattaaatttaatcactcttgaagtgttagatactgaca |
14734721 |
T |
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| Q |
217 |
catgttaaacgccaaacacactttcgatcagaagtgttggatgtaccatactatcaaaattattataagctttcaaaatgcctctcattatataaacata |
316 |
Q |
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| T |
14734722 |
catgtcaaacgccaaacacactttcaatcagaagtgttggttgtaccgtactatcgaaattattataagctttcaaaatgcctctcattatataaacata |
14734821 |
T |
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| Q |
317 |
gccgtcacttagtttttggcaataaaaagaaccctctgtttctctctgc |
365 |
Q |
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| T |
14734822 |
gccgtcacctagtttttggcaataaaaagaaccctctgtttctctctgc |
14734870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 36286519 - 36286559
Alignment:
| Q |
213 |
gacacatgttaaacgccaaacacactttcgatcagaagtgt |
253 |
Q |
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| T |
36286519 |
gacacatgttgaacaccagacacactttcgatcagaagtgt |
36286559 |
T |
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