View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14162_low_19 (Length: 314)

Name: NF14162_low_19
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14162_low_19
NF14162_low_19
[»] chr1 (6 HSPs)
chr1 (11-295)||(35900025-35900309)
chr1 (11-206)||(17810658-17810853)
chr1 (11-220)||(44145915-44146127)
chr1 (11-179)||(11543460-11543628)
chr1 (11-234)||(44613651-44613874)
chr1 (11-205)||(44794493-44794687)
[»] scaffold0061 (1 HSPs)
scaffold0061 (11-220)||(28121-28330)
[»] scaffold0017 (2 HSPs)
scaffold0017 (11-220)||(170462-170671)
scaffold0017 (11-218)||(181549-181756)
[»] chr5 (1 HSPs)
chr5 (11-219)||(29506511-29506719)
[»] chr3 (2 HSPs)
chr3 (11-196)||(8343605-8343790)
chr3 (11-193)||(26729198-26729380)
[»] chr2 (2 HSPs)
chr2 (25-212)||(29227859-29228046)
chr2 (25-212)||(29341158-29341345)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 35900025 - 35900309
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35900025 agaaaatatatttcatggtccattacctttatggattggagatagtttgcaccaattaataatcttaagccttcggttcaataaattcaatggaagtcta 35900124  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900125 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 35900224  T
Q  211 tggctcaggagttcattaattcaacttcatcatttctacctgtggtttcactcaacaactggtcttttaatttaccctatggttt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35900225 tggctcaggagttcattaattcaacttcatcatttctacctgtgatttcactcaacaactggtcttttaatttaccctatggttt 35900309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 17810853 - 17810658
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| || | ||||||| ||    
T  17810853 agaaaataagtttcatggtccattaccttcatgggttggagacaatttacaccaattagtaatcttaagtcttcgattcaataatttaagtggaagtata 17810754  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttact 206  Q
    ||||||||| | |||||||||||||| ||||  || || ||| ||||||| |||| ||||||||||||||||||||||||||||| |||| |||||    
T  17810753 ccttcaaatgtatgttatttgagaaaacttcgagtattggatctgtcactaaataacttatcaggaggaatcccaacttgtgtaatgaattttact 17810658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 44145915 - 44146127
Alignment:
Q  11 agaaaatatgtttcatggtccattaccttt---atggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagt 107  Q
    ||||||||||||||||||||  |||||||    |||||||||||| ||||||||||||||| |||||||||| || |  |||||||| ||||||||||||    
T  44145915 agaaaatatgtttcatggtctgttaccttcttcatggattggagatagtttacaccaattagtaatcttaagcctccaattcaataacttcaatggaagt 44146014  T
Q  108 ctaccttcaaatctctgttatttgagaaat-cttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttact 206  Q
    ||||||||||||||||| ||||||| |||| || || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  44146015 ctaccttcaaatctctg-tatttgaaaaatcctccaagtcttggatctgtcactaaatagcttatcaggaggaatcccaacttgtgtaaataattttact 44146113  T
Q  207 ttaatggctcagga 220  Q
    | ||||| ||||||    
T  44146114 tcaatggatcagga 44146127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 11543628 - 11543460
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||| ||||||| ||||||||||| ||||||||| ||| || |||||||||| ||| |   |||||| |||| ||||||| ||    
T  11543628 agaaaatacgtttcatggtccgttaccttcatggattggaggcagtttacaacaactagtaatcttaagcctttgagccaataacttcagtggaagtata 11543529  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggagga 179  Q
    |||||||||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||||||||||||    
T  11543528 ccttcaaatctctgttatttaagaaaactgcatatcttagatatgtcactaaatagcttatcaggagga 11543460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 44613651 - 44613874
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||||||||||| |||||||||||| || |||||  | |||  ||||||||| ||||| | |||||| ||| |||||||| ||    
T  44613651 agaaaataagtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagttta 44613750  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    ||||||||||||||||| |||| ||| ||||| ||||| ||||||||||| || | | |||||||| |||||||||||||| |||| ||| |||| | ||    
T  44613751 ccttcaaatctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatcccaacttgtataaacaattttacatcaa 44613850  T
Q  211 tggctcaggagttcattaattcaa 234  Q
    || || |||| || |||| |||||    
T  44613851 tgtcttaggacttgattagttcaa 44613874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 44794687 - 44794493
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||||||||||| |||||||||||| || |||||  | |||  ||||||||| ||||| | |||||| ||| |||||||| ||    
T  44794687 agaaaataagtttcatggtccattaccttcatggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagttta 44794588  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttac 205  Q
    ||||||||||||||||| |||| ||| ||||| ||||| ||||||||||| || | | |||||||| |||||||||||||| |||| ||| ||||    
T  44794587 ccttcaaatctctgttacttgacaaaacttcaagtcttggatttgtcactgaacaacatatcaggaagaatcccaacttgtataaacaattttac 44794493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 28330 - 28121
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||  ||||  |||||| |||||||||| ||||| |||||||| |||||||||||||||    
T  28330 agaaaatatgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtcta 28231  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    ||||||||||| |||||||||| ||| ||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||| ||| | |||| ||    
T  28230 ccttcaaatctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccccacttgtgtaaacaatttaacttcaa 28131  T
Q  211 tggctcagga 220  Q
    ||||||||||    
T  28130 tggctcagga 28121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 170462 - 170671
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||  ||||  |||||| |||||||||| ||||| |||||||| |||||||||||||||    
T  170462 agaaaatatgtttcaaggtccattaccttcatggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtcta 170561  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    ||||||||||| |||||||||| ||| ||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||| ||| | |||| ||    
T  170562 ccttcaaatctatgttatttgacaaaacttcatgtcttagatatgtcactaaataatttatcaggaggaatccccacttgtgtaaacaatttaacttcaa 170661  T
Q  211 tggctcagga 220  Q
    ||||||||||    
T  170662 tggctcagga 170671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 181549 - 181756
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||||||||||  |||||||||| | ||||||||||||||| |||||||||| ||||| ||||| || |||||||||| |||     
T  181549 agaaaataagtttcatggtccattacctgcatggattggacaaagtttacaccaattagtaatcttaagccttcgattcaacaacttcaatggaattctt 181648  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    |||||||||||||||||||||| ||| ||||||||||| ||| ||||  | ||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  181649 ccttcaaatctctgttatttgacaaaacttcatgtcttggatctgtccgtaaatagcttatcaggaggaatcccaacttgtgtaaagaattttacttcaa 181748  T
Q  211 tggctcag 218  Q
    || |||||    
T  181749 tgactcag 181756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 29506719 - 29506511
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||  ||||| | ||||| | ||| ||     
T  29506719 agaaaatatgtttcatggtccaataccttcatggattggagacagtttacaccagttaataatcttaagccttcgactcaatgatttcaacgaaagcctg 29506620  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaa 210  Q
    |||||||| || |||||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||    
T  29506619 ccttcaaacctatgttatttgagagaacttcaagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatgtgtaaagaattttacttcaa 29506520  T
Q  211 tggctcagg 219  Q
    |||||||||    
T  29506519 tggctcagg 29506511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 8343605 - 8343790
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    |||||||| |||||||||||||||||||| ||||||||||||||  ||||| |||||| ||||||||||  ||||  ||||||| |||||||||||| ||    
T  8343605 agaaaataagtttcatggtccattaccttcatggattggagacaacttacatcaattagtaatcttaagcattcgagtcaataacttcaatggaagtata 8343704  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaa 196  Q
    ||||||||||| |||||||||||||| ||||||||||| ||| |||| || |||| |||||||||||| || ||| | ||||||||    
T  8343705 ccttcaaatctttgttatttgagaaaacttcatgtcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaa 8343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 26729198 - 26729380
Alignment:
Q  11 agaaaatatgtttcatggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtcta 110  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||  ||||||||||| ||||| |||||||||||||| ||| |||||||| ||    
T  26729198 agaaaatatgtttcatggtccattacctgcatggattggagagagtttacggcaattaataatattaagccttcggttcaataacttctatggaagtata 26729297  T
Q  111 ccttcaaatctctgttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgt 193  Q
    ||||||||| | |||||||||||||| |||   ||||| ||| | || || |||| ||||||||||||||||||||| |||||    
T  26729298 ccttcaaatatttgttatttgagaaaccttagagtcttggatctttccctaaataacttatcaggaggaatcccaacatgtgt 26729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 29228046 - 29227859
Alignment:
Q  25 atggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatctctg 124  Q
    ||||| |||| ||||||||||||||||||||| ||||   || | |||||||||| ||||| |  || |  ||||||||||||||| |||||||||||||    
T  29228046 atggtgcattgcctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctg 29227947  T
Q  125 ttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatg 212  Q
    |||||||||| | ||||| || |||||| ||||||| |||||||| ||||||||||| ||| | ||||| |||||| |||||| ||||    
T  29227946 ttatttgagagaacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatg 29227859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 29341345 - 29341158
Alignment:
Q  25 atggtccattacctttatggattggagacagtttacaccaattaataatcttaagtcttcggttcaataaattcaatggaagtctaccttcaaatctctg 124  Q
    ||||| |||| ||||||||||||||||||||| ||||   || | |||||||||| ||||| |  || |  ||||||||||||||| |||||||||||||    
T  29341345 atggtgcattgcctttatggattggagacagtctacaaggatcactaatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctg 29341246  T
Q  125 ttatttgagaaatcttcatgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaagaatcttactttaatg 212  Q
    |||||||||| | ||||| || |||||| ||||||| |||||||| ||||||||||| ||| | ||||| |||||| |||||| ||||    
T  29341245 ttatttgagagaacttcaagtattagatctgtcactaaatagcttctcaggaggaattccatcatgtgttaagaattttacttcaatg 29341158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University