View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_low_4 (Length: 951)
Name: NF14162_low_4
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_low_4 |
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| [»] scaffold0072 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Complemental strand, 4003066 - 4002524
Alignment:
| Q |
17 |
aagaaatatgcttcaaattagaatcttaagtctatgctggcagaacaagagaaagctgaatccaaggctattgagaaagaaaattctacccaaagtattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4003066 |
aagaaatatgcttcaaattagaatcttaagtctatgctggcagaacaagagaaagctgaatccaaggctattgaga--gaaaattctacccaaagtattt |
4002969 |
T |
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| Q |
117 |
tttgaggcttaaagtgaaaattcagatatatcttttaaaatttattactgttttgattataaaactatattttatctttattgtaaattatagagctttt |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4002968 |
tttgaggcttaaagtgaaaattcagatgtatcttttaaaatttatttctgttt-gattataaaactatattttatctttattgtaaattatagagttttt |
4002870 |
T |
|
| Q |
217 |
gtactttaaaatataattattaaagtggatgtaaaattttgatgtgtgtgaattttatattggagctttatggatttgtttatgagtaaatagacaatta |
316 |
Q |
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| T |
4002869 |
gtactttaaaatataattattaaagtggatgtaaaattttgatgtgtgtgaattttatattggagctttatggatttgtttaagagtaaataggcaatta |
4002770 |
T |
|
| Q |
317 |
ctcccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagatattacatcataca |
416 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4002769 |
ctcccgtgcccgtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagatattacatcataca |
4002670 |
T |
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| Q |
417 |
caaatataatttatttaacacgtataagagtaatatataaaacttatgacttgtgaaataaaatctgaagaatac-aaactcttggtttaatttagatct |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4002669 |
caaatataatttatttaacacgtataagagtaatatataaaacttatgacttgtgaaataaaatctgaagaatacaaaactcttggtttaatttagatct |
4002570 |
T |
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| Q |
516 |
gatagtttgatagttgtctgttatcactgcattgtgcagattgctg |
561 |
Q |
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| T |
4002569 |
gatagtttgatagttgtctgttatcactgcattttgcagattgctg |
4002524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 22216441 - 22216523
Alignment:
| Q |
316 |
actcccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattata |
398 |
Q |
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| T |
22216441 |
actcccgtatctgtctgtccgttttttctattgcgctaacgtatgtatgtatttgattatatttttttgtataaattaatata |
22216523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 23459204 - 23459276
Alignment:
| Q |
331 |
tgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagat |
403 |
Q |
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| T |
23459204 |
tgtccgctctttctactgcgctaacgtatgtatatacttgactatgtttctttgtataaattgatatatagat |
23459276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 46302 - 46358
Alignment:
| Q |
316 |
actcccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgat |
372 |
Q |
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| T |
46302 |
actcccgtgcccgtctgtccgctttttctactgcgctaacgtatttatatacttgat |
46358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 23814517 - 23814584
Alignment:
| Q |
333 |
tccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatata |
400 |
Q |
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| T |
23814517 |
tccgctttttctactgctctaacgtatttatatattttattgtgtttctttctataaattaatatata |
23814584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 42510 - 42457
Alignment:
| Q |
319 |
cccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgat |
372 |
Q |
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| T |
42510 |
cccgtgcccgtctgtccgctttttctagtgcgctaacgtatgtatatacttgat |
42457 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 1136160 - 1136217
Alignment:
| Q |
328 |
gtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgt |
385 |
Q |
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| T |
1136160 |
gtctgtccgttttttctactgcgctaacgtatgcatatacttaattatgtttctttgt |
1136217 |
T |
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