View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14162_low_5 (Length: 835)

Name: NF14162_low_5
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14162_low_5
NF14162_low_5
[»] chr2 (10 HSPs)
chr2 (530-821)||(18929235-18929526)
chr2 (530-819)||(26650839-26651130)
chr2 (530-813)||(17402729-17403013)
chr2 (585-800)||(25520385-25520601)
chr2 (585-769)||(31404020-31404205)
chr2 (540-657)||(19878972-19879090)
chr2 (585-769)||(24543870-24544054)
chr2 (585-694)||(29891239-29891348)
chr2 (610-753)||(20478255-20478396)
chr2 (585-717)||(28760593-28760724)
[»] chr7 (13 HSPs)
chr7 (534-819)||(20145813-20146098)
chr7 (530-817)||(2546914-2547198)
chr7 (530-801)||(14987006-14987278)
chr7 (530-801)||(15416617-15416889)
chr7 (585-813)||(17600539-17600766)
chr7 (530-779)||(24832402-24832657)
chr7 (585-819)||(3743380-3743620)
chr7 (585-772)||(4173426-4173615)
chr7 (585-696)||(10649207-10649318)
chr7 (636-695)||(5531725-5531784)
chr7 (636-753)||(18046386-18046501)
chr7 (708-753)||(14961170-14961215)
chr7 (708-753)||(15390642-15390687)
[»] chr8 (15 HSPs)
chr8 (530-819)||(28371034-28371324)
chr8 (530-814)||(9218079-9218367)
chr8 (586-769)||(9286315-9286498)
chr8 (690-816)||(10660970-10661095)
chr8 (585-728)||(23540207-23540351)
chr8 (585-731)||(16600591-16600737)
chr8 (535-697)||(10661748-10661911)
chr8 (616-758)||(13110204-13110345)
chr8 (585-661)||(24577332-24577408)
chr8 (618-758)||(18672125-18672261)
chr8 (585-753)||(25095053-25095223)
chr8 (681-728)||(26136195-26136242)
chr8 (663-753)||(22713661-22713751)
chr8 (585-753)||(27123570-27123736)
chr8 (711-753)||(9006931-9006973)
[»] chr5 (15 HSPs)
chr5 (530-793)||(19217915-19218177)
chr5 (530-779)||(20064397-20064653)
chr5 (532-779)||(20060802-20061056)
chr5 (530-728)||(20713228-20713426)
chr5 (530-728)||(23210042-23210240)
chr5 (534-779)||(20058571-20058824)
chr5 (537-697)||(23379314-23379474)
chr5 (530-709)||(25951334-25951513)
chr5 (585-753)||(17167249-17167417)
chr5 (597-753)||(19923956-19924112)
chr5 (636-769)||(24878356-24878489)
chr5 (597-753)||(19926683-19926839)
chr5 (615-753)||(17987482-17987619)
chr5 (585-644)||(21165282-21165342)
chr5 (786-817)||(24878288-24878319)
[»] chr3 (16 HSPs)
chr3 (534-812)||(24698999-24699275)
chr3 (531-819)||(15686859-15687148)
chr3 (585-813)||(26010836-26011067)
chr3 (585-800)||(13428700-13428914)
chr3 (585-792)||(4769742-4769949)
chr3 (585-817)||(4765677-4765916)
chr3 (530-728)||(7148790-7148988)
chr3 (585-819)||(4832504-4832740)
chr3 (530-736)||(9033415-9033622)
chr3 (530-725)||(29614529-29614724)
chr3 (585-763)||(23378488-23378668)
chr3 (588-728)||(16242928-16243069)
chr3 (636-759)||(27304424-27304547)
chr3 (711-753)||(13409834-13409876)
chr3 (685-759)||(8737234-8737308)
chr3 (685-759)||(9089472-9089546)
[»] chr6 (13 HSPs)
chr6 (588-819)||(22397545-22397777)
chr6 (530-728)||(16177304-16177502)
chr6 (610-810)||(17524797-17524998)
chr6 (532-728)||(1177150-1177349)
chr6 (530-724)||(15830026-15830220)
chr6 (588-753)||(17947842-17948007)
chr6 (616-769)||(14762938-14763090)
chr6 (636-769)||(18713709-18713842)
chr6 (530-779)||(31126082-31126351)
chr6 (60-101)||(17365558-17365599)
chr6 (711-753)||(25945847-25945889)
chr6 (666-767)||(28712360-28712461)
chr6 (207-284)||(17365687-17365764)
[»] chr4 (7 HSPs)
chr4 (548-819)||(11361595-11361866)
chr4 (530-812)||(9409083-9409370)
chr4 (587-769)||(16675086-16675269)
chr4 (666-728)||(5358040-5358102)
chr4 (588-686)||(8140832-8140930)
chr4 (585-753)||(4697470-4697638)
chr4 (711-753)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (530-774)||(20146169-20146420)
chr1 (585-793)||(11013817-11014027)
chr1 (585-763)||(33103021-33103201)
chr1 (597-769)||(36571655-36571826)
chr1 (599-769)||(22607834-22608003)
chr1 (585-750)||(20150422-20150588)
chr1 (585-725)||(13202052-13202192)
chr1 (588-753)||(17615274-17615439)
chr1 (57-112)||(20839758-20839813)
chr1 (636-726)||(22620063-22620153)
chr1 (585-648)||(13232737-13232801)
chr1 (697-769)||(20866221-20866293)
[»] scaffold0555 (1 HSPs)
scaffold0555 (530-774)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (533-819)||(20793-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (537-697)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (597-769)||(17221-17392)
scaffold0337 (610-769)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (585-749)||(374113-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (585-738)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (585-721)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (531-577)||(5989-6035)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 530 - 821
Target Start/End: Complemental strand, 18929526 - 18929235
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| | ||| || |||||||  ||||||||| ||  |||| |||| |||||||||    
T  18929526 tctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaaaatgggttgcaaatcac 18929427  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||| | |||||||||||| |||||||||||| | ||||||| | ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  18929426 ctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaaccacctttatttttaatgca 18929327  T
Q  729 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccacagg 821  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||    
T  18929326 ttgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaatacgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 530 - 819
Target Start/End: Complemental strand, 26651130 - 26650839
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 627  Q
    ||||||||||| ||||| | || |||||||| ||||||||| | |||| | | || ||||||||||||||||||||||||  ||||| ||||||||||||    
T  26651130 tctacatggaatgagtgctaatcgtgggattggtttctttcta-gttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaatca 26651032  T
Q  628 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    |||||||| |||||||||||| |||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  26651031 cctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataatcc 26650932  T
Q  728 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 819  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650931 attgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 530 - 813
Target Start/End: Complemental strand, 17403013 - 17402729
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccata-gaaaaacgggtcgcaaatca 627  Q
    ||||| |||||||||||||||| ||||||||    | |||||| |||| | |||| ||||||||||  |||| |||||| | ||||| ||||||||||||    
T  17403013 tctacgtggaaggagtgttgatcgtgggattatgctttttcca-gttattttcttatgtataaatagtagttctccataaggaaaacaggtcgcaaatca 17402915  T
Q  628 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    |||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  17402914 cctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataaccacctttatttttaatgc 17402815  T
Q  728 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagac 813  Q
    |||||||||||  ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  17402814 attgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaaagac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 585 - 800
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| |||||||  ||| ||||||||||||||| ||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 783  Q
     |||||||||||||| ||||||||||  ||||||||||||||||| |||| |||| |||| |||||| || ||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  784 gcttttaaaaccttttt 800  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 585 - 769
Target Start/End: Original strand, 31404020 - 31404205
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||||   |||| |||||||||||||| |||  ||| |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  31404020 tgtataaatagtagttttccatattgaaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 31404118  T
Q  684 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    |||||||||| ||| |||||||||||| ||||||  |||||||||| || | ||||||||| ||||||||| ||||| |||||||||    
T  31404119 gaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 540 - 657
Target Start/End: Complemental strand, 19879090 - 19878972
Alignment:
Q  540 aggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaa 638  Q
    |||||||||||| |||||||| |||||||||||| ||| | ||| |||| |||||  |||||||||||| ||||||||||||||||||||||||||| ||    
T  19879090 aggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaaaacgggtcgcaaatcacctatacagaa 19878991  T
Q  639 ttctaaaacattcgaagta 657  Q
    |||||||||| | ||||||    
T  19878990 ttctaaaacactagaagta 19878972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 585 - 769
Target Start/End: Complemental strand, 24544054 - 24543870
Alignment:
Q  585 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||| |||| ||| ||  | |||| |||||||| ||| ||||||||||||| | ||| |    
T  24544054 tgtataaatagtagttttccataggaaaaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttataca 24543956  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
     ||| |||||||||||||| | |||| |||||||||||||||||| || | ||||  ||||||  |||||  |||||||| |||||    
T  24543955 taatatatgtaaaggatttctggaaccacctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 694
Target Start/End: Original strand, 29891239 - 29891348
Alignment:
Q  585 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||| |||||| ||||||||||||||| ||||| |||| ||| || ||||||| || ||||| ||| ||||||||||||| | ||| |    
T  29891239 tgtataaatagtagttgtccatatgaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttataca 29891337  T
Q  684 gaatgtatgta 694  Q
     ||||||||||    
T  29891338 aaatgtatgta 29891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 753
Target Start/End: Original strand, 20478255 - 20478396
Alignment:
Q  610 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaa-ggatttgtcgaa 708  Q
    |||| |||||||||||||  |||||| ||||||| |||| || || |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  709 ctacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    | ||||||| |||||||| |||| ||||    |||||||||||||    
T  20478352 ccacctttaattttaatgaattgcatttatgttttcctttaagtt 20478396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 717
Target Start/End: Original strand, 28760593 - 28760724
Alignment:
Q  585 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataa 682  Q
    |||||||||||||||||| |||| |||||||  | |||||||||  ||||  ||||||||  ||  |||||||||||| | | |||||||||||| |||     
T  28760593 tgtataaataagagtttttcatatgaaaaacaagacgcaaatcatttata--aaattctagcac--tcgaagtaccggcgtctagagaaaagagtcatat 28760688  T
Q  683 agaatgtatgtaaa-ggatttgtcgaactaccttta 717  Q
    ||||||||||||||  |||||||||||| |||||||    
T  28760689 agaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 534 - 819
Target Start/End: Complemental strand, 20146098 - 20145813
Alignment:
Q  534 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 632  Q
    ||||||||||||| |||| |||||||| |||||||||||||||| |  || ||||||||||  |||||| |||||  |||||||||||||||||||| ||    
T  20146098 catggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaaaacgggtcgcaaatcacccat 20145999  T
Q  633 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 732  Q
     || |||||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20145998 gcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgt 20145899  T
Q  733 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 819  Q
    ||| ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  20145898 attctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaagacgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 530 - 817
Target Start/End: Complemental strand, 2547198 - 2546914
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 627  Q
    |||||||||||||||||||||| |||||||| ||||||||| | |||| | | || ||||||| ||| ||||||||||||  ||||||||||||||||||    
T  2547198 tctacatggaaggagtgttgatcgtgggattagtttctttcta-gttatttttctatgtataagtaatagttttccatagggaaaacgggtcgcaaatca 2547100  T
Q  628 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    |||||| | |||||||||||| |||||||||||   |||||||||| ||| |||||||||| |||||||||||||| |  || |||||||||||     |    
T  2547099 cctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagaccacctttatttta----c 2547004  T
Q  728 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 817  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  2547003 attgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaagacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 530 - 801
Target Start/End: Original strand, 14987006 - 14987278
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  14987006 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 14987104  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  14987105 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 14987204  T
Q  729 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 801  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987205 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 530 - 801
Target Start/End: Original strand, 15416617 - 15416889
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  15416617 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 15416715  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  15416716 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 15416815  T
Q  729 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 801  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416816 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 585 - 813
Target Start/End: Complemental strand, 17600766 - 17600539
Alignment:
Q  585 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||| ||||||| |||||    
T  17600766 tgtataaatagtagttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaa 17600667  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 783  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||  || ||||||||| |  | |||| |||||    
T  17600666 gaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttt 17600569  T
Q  784 gcttttaaaaccttttttctgtcgaaagac 813  Q
     ||||||||||||||||| |||||||||||    
T  17600568 tcttttaaaaccttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 530 - 779
Target Start/End: Complemental strand, 24832657 - 24832402
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| ||||  || |||| ||||||||| |  ||| |  || ||||||||||| |||||| |||||  ||||||||||||||||| |    
T  24832657 tctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacgggtcgcaaatcgc 24832559  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||| ||||||| |||||||| ||| || |||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  24832558 ctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccattatttttaatgca 24832460  T
Q  729 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 779  Q
           |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  24832459 cttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 585 - 819
Target Start/End: Complemental strand, 3743620 - 3743380
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataa 682  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||   |||||||||| ||||    
T  3743620 tgtataaatagtagttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataa 3743521  T
Q  683 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt-aaactt-aatgccttaac 780  Q
    | |||||||  |||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||| ||| | ||||||||| |||||| |||||||| ||    
T  3743520 aaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttac 3743421  T
Q  781 tttgctttt--aaaaccttttttctgtcgaaagacgccaca 819  Q
    ||| || ||  |||||| ||||| ||||||||||| |||||    
T  3743420 tttactgttaaaaaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 585 - 772
Target Start/End: Original strand, 4173426 - 4173615
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  || |||||||||  ||||||||||||||||| |||||| | |||||||||||| |||||||| ||  ||||||||||||||| |||||    
T  4173426 tgtataaatattagatttccatagggaaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaa 4173525  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-ttgtattttacctttcctttaagttcctgcaatttaaacttaat 772  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||    ||| ||||||||| ||||||||||||||||||    
T  4173526 gaatgtatgtaaaggatttgtcgaactagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 696
Target Start/End: Original strand, 10649207 - 10649318
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||| |||||||  |||| | |||||||||||| |||| ||| ||| |||||| ||||||||||||  |||||||||||||| |||||    
T  10649207 tgtataaatagtagttgtccatagggaaaatgagtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaa 10649305  T
Q  684 gaatgtatgtaaa 696  Q
    |||||||||||||    
T  10649306 gaatgtatgtaaa 10649318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 5531725 - 5531784
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 695  Q
    ||||| || |||| |||||||||||| ||||||||||||||| ||| | |||||||||||    
T  5531725 aaattatacaacactcgaagtaccggtgcgagagaaaagagttatacaaaatgtatgtaa 5531784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 753
Target Start/End: Complemental strand, 18046501 - 18046386
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtat 734  Q
    ||||||||||||| | |||||||||| |||||| |||||    ||| | ||||| ||||| | |||||||||||| ||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaaggc--atacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  735 tttacctttcctttaagtt 753  Q
    ||||||||| |||||||||    
T  18046404 tttaccttttctttaagtt 18046386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 753
Target Start/End: Complemental strand, 14961215 - 14961170
Alignment:
Q  708 actacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  14961215 actacctttatttttaatgcaatgcattttaccttttctttgagtt 14961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 753
Target Start/End: Complemental strand, 15390687 - 15390642
Alignment:
Q  708 actacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  15390687 actacctttatttttaatgcaatgcattttaccttttctttgagtt 15390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 3e-87; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 530 - 819
Target Start/End: Complemental strand, 28371324 - 28371034
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatca 627  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||| ||||||||||  ||||||||||||  |||| |||||||||||||    
T  28371324 tctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccatagggaaaatgggtcgcaaatca 28371226  T
Q  628 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    |||||| |||||||||||||| |||||||||| | | ||| ||||| ||| ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  28371225 cctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacctcctttatttttaatgc 28371126  T
Q  728 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 819  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  28371125 attgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaagacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 530 - 814
Target Start/End: Complemental strand, 9218367 - 9218079
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattc-gtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatc 626  Q
    ||||||||||||||||||||||  |||||||  | || ||| || |||||| | || ||||||||||   |||||||||||  |||||||||||||||||    
T  9218367 tctacatggaaggagtgttgatcatgggattgtgcttttttgca-gttagtttattatgtataaatagttgttttccatagggaaaacgggtcgcaaatc 9218269  T
Q  627 acctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 726  Q
    || |||||| |||||||||||| |||||||||||  ||||||||||||  | ||| |||||||||||||| |||||||||||| | ||||||||||||||    
T  9218268 acatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaatgatttgtcgaaccatctttatttttaatg 9218171  T
Q  727 cattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacc----ttttttctgtcgaaagacg 814  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||  || ||||||||||||||| |    |||||||||||||||||||    
T  9218170 cattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacctttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 586 - 769
Target Start/End: Original strand, 9286315 - 9286498
Alignment:
Q  586 gtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 684  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||||| ||| ||| |     
T  9286315 gtataaatagtagttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaa 9286413  T
Q  685 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||  |||||||| ||||| ||| |||||    
T  9286414 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 690 - 816
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  690 atgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 789  Q
    |||||||||||||||||||| ||||||||||| |||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  790 aaaaccttttttctgtcgaaagacgcc 816  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 585 - 728
Target Start/End: Original strand, 23540207 - 23540351
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | || |||||||||  | |||||||||| | |||||    
T  23540207 tgtataaatagtagttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaa 23540306  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  23540307 gaatgtatgtaaaagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 585 - 731
Target Start/End: Complemental strand, 16600737 - 16600591
Alignment:
Q  585 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||| ||||| ||| |    
T  16600737 tgtataaatagtagttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttataca 16600639  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 731  Q
     |||||| |||||||||||||||||| || ||||||||||||||||||    
T  16600638 taatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 535 - 697
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  535 atggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttcca-tagaaaaacgggtcgcaaatcacctata 633  Q
    ||||||||||||||||| |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||| | | ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttcc-agttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  634 caaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 697  Q
    || |||||| |||||  || | ||||||| |||| | |||||||| |||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 616 - 758
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  616 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 715  Q
    ||||||||||||| |||| ||| ||||| |||| |||||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| |||| |||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  716 tatttttaatgcattgtattttacctttcctttaagttcctgc 758  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 585 - 661
Target Start/End: Original strand, 24577332 - 24577408
Alignment:
Q  585 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccgg 661  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  24577332 tgtataaatagtagtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 618 - 758
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  618 tcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactaccttta 717  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  718 tttttaatgcattgtattttacctttcctttaagttcctgc 758  Q
    ||||||||||| |||| |||| |||| ||| ||||| ||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 585 - 753
Target Start/End: Complemental strand, 25095223 - 25095053
Alignment:
Q  585 tgtataaataagagttttccatag--aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 682  Q
    ||||||||||  |||||||||||   |||||| |  |||||||||| |||| ||| ||||||||||  ||||||||||| |||||| |||||||| |||     
T  25095223 tgtataaatagtagttttccatattaaaaaacagaccgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatac 25095125  T
Q  683 agaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |  |||||||| |||  ||||||||||| ||||||||| | |||||| || | |||| |||| |||||||||    
T  25095124 atgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaatttatcttttctttaagtt 25095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 728
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  681 aaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 753
Target Start/End: Original strand, 22713661 - 22713751
Alignment:
Q  663 gcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||||||||||||| ||||  ||| |||| |||||||||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtt 22713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 585 - 753
Target Start/End: Original strand, 27123570 - 27123736
Alignment:
Q  585 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| ||  |||||||  ||||||||||||||| ||| |    
T  27123570 tgtataaatagtagttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactc--agtaccgatgcgagagaaaagagttataca 27123666  T
Q  684 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
     |||||||||||   ||||| |||||| ||||||| |||||||||| || | |||| | ||||||||||||    
T  27123667 taatgtatgtaatctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtt 27123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 9006973 - 9006931
Alignment:
Q  711 acctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  9006973 acctttatttttaatgcaatacattttacctttcctttaagtt 9006931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 530 - 793
Target Start/End: Original strand, 19217915 - 19218177
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    |||||||| |||||||| || | |||||||| ||||||||||| |||| | | | |||||||||||  |||||||||||  |||||||||||||||||||    
T  19217915 tctacatgaaaggagtgctggtcgtgggattagtttctttcca-gttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaatcac 19218013  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19218014 ctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 19218112  T
Q  729 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa 793  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  19218113 ttgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 530 - 779
Target Start/End: Original strand, 20064397 - 20064653
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||  ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20064397 tctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20064495  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||||||||||| |  ||||||||| || |||||||||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||||    
T  20064496 ctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatttttaatgca 20064595  T
Q  729 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 779  Q
           || ||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20064596 cttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 532 - 779
Target Start/End: Complemental strand, 20061056 - 20060802
Alignment:
Q  532 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa-acgggtcgcaaatcacct 630  Q
    |||||| || ||||| |||| |||||||| ||||||||| || ||| |  || ||||||||| | ||||||||||||   | |||||| ||||||| |||    
T  20061056 tacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggtagacgggttgcaaatcgcct 20060958  T
Q  631 atacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-- 728  Q
    ||||| |||||||||||||| ||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||      
T  20060957 atacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcact 20060858  T
Q  729 -----ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 779  Q
         |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20060857 tgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 530 - 728
Target Start/End: Complemental strand, 20713426 - 20713228
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| |||| |||||||| ||||||||| || ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20713426 tctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20713328  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
     |||||| |||||||||||| ||||| |||||  || |||||||||||| |||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  20713327 atatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaacctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 530 - 728
Target Start/End: Original strand, 23210042 - 23210240
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    |||| ||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||| ||||| ||||||  ||||| |||||||||||      
T  23210042 tctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccatagggaaaacaggtcgcaaatcgt 23210140  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
     |||||| |||||||||||| |||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||    
T  23210141 atatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaaccacttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 534 - 779
Target Start/End: Original strand, 20058571 - 20058824
Alignment:
Q  534 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctat 632  Q
    ||||||||||||| |||| |||||||| |||| ||| | | ||| |  || ||||||||| | ||||||||||| |  | || ||| ||||||| |||||    
T  20058571 catggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggtagacaggttgcaaatcgcctat 20058670  T
Q  633 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca---- 728  Q
     |||||||||||||||||| ||||||  | || |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||        
T  20058671 gcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatttttaatgcaattg 20058770  T
Q  729 ---ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 779  Q
       |||||||||   |||  |||||||| |||||||||||||||||||| ||||    
T  20058771 catttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 537 - 697
Target Start/End: Original strand, 23379314 - 23379474
Alignment:
Q  537 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 635  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  23379314 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 23379412  T
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 697  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  23379413 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 530 - 709
Target Start/End: Complemental strand, 25951513 - 25951334
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    |||||||||||||||||||||| ||| |||| |||||||| | | ||| |  |  ||||||||||| ||||||||||||  ||||| ||||| ||||| |    
T  25951513 tctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaacaggtcgtaaatcgc 25951414  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 709  Q
     |||||| |||||||||||| || |||||||| |  ||||||||||||| |||||||||||||||||| ||||||||||||    
T  25951413 ttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaac 25951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 753
Target Start/End: Original strand, 17167249 - 17167417
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||| |  |||||||||| |||||||| |||| ||| ||||| ||||   |||||||| | ||||||||||||||| ||| |    
T  17167249 tgtataaatagtagttttccatggggaaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaataca 17167347  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
     ||||||||||||||||||||||||| |||||||||||||||| | || | |||| |||| |||||||||    
T  17167348 aaatgtatgtaaaggatttgtcgaaccacctttatttttaatgtaatgcaatttatcttttctttaagtt 17167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 597 - 753
Target Start/End: Original strand, 19923956 - 19924112
Alignment:
Q  597 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 695  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||||||| ||| ||||||||| |||    
T  19923956 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaagagttatacagaatgtatataa 19924054  T
Q  696 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    | |||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||    
T  19924055 aagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtt 19924112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 636 - 769
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 735  Q
    |||||||| |||| ||||| |||||  ||||||||||||||| |||   ||| ||||||||||||||||| ||| |||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  736 ttacctttcctttaagttcctgcaatttaaactt 769  Q
    ||| |||| ||||||||| ||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 597 - 753
Target Start/End: Original strand, 19926683 - 19926839
Alignment:
Q  597 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 695  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||| ||| ||| ||||||||  |||    
T  19926683 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaatagttatacagaatgtaaataa 19926781  T
Q  696 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    | |||||||||||| |||||||||||||||||| || | |||| |||| |||||||||    
T  19926782 aagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtt 19926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 753
Target Start/End: Complemental strand, 17987619 - 17987482
Alignment:
Q  615 gggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataaagaatgtatgtaaag-gatttgtcgaactac 712  Q
    |||||||||||||  |||||| |||||||||||| || || |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || | ||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtagacc-ac 17987523  T
Q  713 ctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  17987522 ctttatttttaatgcaatgcattttacctttcctttgagtt 17987482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 644
Target Start/End: Complemental strand, 21165342 - 21165282
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaa 644  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| |||||| | ||||||||    
T  21165342 tgtataaataatagttttccatagggaaaacgggtcgcaaatcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 786 - 817
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  786 ttttaaaaccttttttctgtcgaaagacgcca 817  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 534 - 812
Target Start/End: Original strand, 24698999 - 24699275
Alignment:
Q  534 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 632  Q
    ||||||||||||||||   ||| |||| |||||||| |  |||| | ||| ||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  24698999 catggaaggagtgttggacgtgtgattagtttcttttcc-gttattttctatgtataaataatagttttccatagggaaaacgggtcgcaaatcccctat 24699097  T
Q  633 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 732  Q
    ||| |||||||||||| |||||||||||| ||||||||||||| | |  |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24699098 acagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aagaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgt 24699195  T
Q  733 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaaga 812  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  24699196 attttacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 531 - 819
Target Start/End: Complemental strand, 15687148 - 15686859
Alignment:
Q  531 ctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaa-aaacgggtcgcaaatcacc 629  Q
    |||||| ||||||||| |||| |||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||   ||||| |||||||||||||    
T  15687148 ctacatagaaggagtgatgatcgtgggattagtttctttcca-gttattttctatgtataaataagagttttccatagtggaaacgagtcgcaaatcacc 15687050  T
Q  630 tatacaaaattctaaaac-attcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    |||||  ||||||||||  | |||||||||||  |||||||||||||||  ||||||||||||| || |||||| | | || ||||||||||||||||||    
T  15687049 tatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggaccacctttatttttaatgca 15686950  T
Q  729 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 819  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||    
T  15686949 ttgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaacacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 585 - 813
Target Start/End: Complemental strand, 26011067 - 26010836
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  26011067 tgtataaatagtagttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaa 26010968  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa---tttaaacttaatgccttaac 780  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||    |||||||||||||||| ||    
T  26010967 gaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttac 26010868  T
Q  781 tttgcttttaaaaccttttttctgtcgaaagac 813  Q
    ||||||||||||| |  ||||||||||||||||    
T  26010867 tttgcttttaaaaac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 585 - 800
Target Start/End: Original strand, 13428700 - 13428914
Alignment:
Q  585 tgtataaataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||||   ||||  ||||||||||||||||| ||  |||||||||| |||||||||||  | ||||||||||||| |||||    
T  13428700 tgtataaatagtagttttccataggggaaacatgtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaa 13428797  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 783  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||    
T  13428798 gaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttacttt 13428897  T
Q  784 gcttttaaaaccttttt 800  Q
    |||||||||||| ||||    
T  13428898 gcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 585 - 792
Target Start/End: Complemental strand, 4769949 - 4769742
Alignment:
Q  585 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 684  Q
    ||||||||||  ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||||    
T  4769949 tgtataaatagtagttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaag 4769850  T
Q  685 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttg 784  Q
    ||||||||||| | |||| |||||| |||||||||| |||||||||||||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  4769849 aatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttg 4769750  T
Q  785 cttttaaa 792  Q
    ||||||||    
T  4769749 cttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 585 - 817
Target Start/End: Original strand, 4765677 - 4765916
Alignment:
Q  585 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||||| |  ||||||||||| | || ||||  | ||||||||||||||| |||||    
T  4765677 tgtataaatagtagttttccataggaaaaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaa 4765776  T
Q  684 gaat----gtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgcctta 778  Q
    ||||    ||||||||| |||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||  ||||| |||||||||||||||||     
T  4765777 gaattaatgtatgtaaatgatttgtcgaaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgccttt 4765876  T
Q  779 actttgctttt-aaaaccttttttctgtcgaaagacgcca 817  Q
    ||||||||||| |||||| ||||  |||||||||||||||    
T  4765877 actttgcttttaaaaacccttttcatgtcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 530 - 728
Target Start/End: Complemental strand, 7148988 - 7148790
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaac-gggtcgcaaatcac 628  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||| |  || ||||||||||  |||||||||||| ||||| ||||| |||||  |    
T  7148988 tctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaaaccgggtcacaaattgc 7148890  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||||||||| | | |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  7148889 ctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 585 - 819
Target Start/End: Original strand, 4832504 - 4832740
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||||  |||| || |||||||||||||||||| |||||||||||| |||||| |  || | ||||||||||||| | |||    
T  4832504 tgtataaatagtagttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaa 4832603  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 783  Q
    |||| ||| |||||||| ||  | || |||||||| |||||||||||||||||||  |||||||| ||||  |||||||||||||||||| ||| || ||    
T  4832604 gaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttacctt 4832703  T
Q  784 gcttttaaaa-ccttttttctgtcgaaagacgccaca 819  Q
    ||||| |||| |||||||||| |||||||||| ||||    
T  4832704 gctttaaaaacccttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 530 - 736
Target Start/End: Original strand, 9033415 - 9033622
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccatagaaaaacgggtcgcaaatcac 628  Q
    |||||||||| ||||||||||| ||| |||| |||||||||||  ||| | |||| ||||||||||| |||||||||||| ||||||||||||| ||| |    
T  9033415 tctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaaaacgggtcgcatatcgc 9033512  T
Q  629 ctatacaaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    ||||||| |||| | |||||| |||||||| ||| || ||||||||  || | ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9033513 ctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaaccacctttatttttaatgc 9033612  T
Q  728 a-ttgtattt 736  Q
    | ||||||||    
T  9033613 acttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 530 - 725
Target Start/End: Original strand, 29614529 - 29614724
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||  ||| |  || |||||||| || ||||||||||||  |||| |||||||||||| |    
T  29614529 tctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaaaatgggtcgcaaatcgc 29614626  T
Q  629 ctatacaaaattctaa-aacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaat 725  Q
    ||||| | |||||||| |||| |||||||||||   | |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29614627 ctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 585 - 763
Target Start/End: Complemental strand, 23378668 - 23378488
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||| |||||  |||| | ||| |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||| ||| |    
T  23378668 tgtataaatagtagttttacatagggaaaatgtgtcacaaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcataca 23378569  T
Q  684 gaatgtatgtaaaggatttg-tcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 763  Q
     ||||||||||||||||||| | |||| |||||||||||||||||| || | |||| |||||||||||||| || ||||||    
T  23378568 taatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 588 - 728
Target Start/End: Original strand, 16242928 - 16243069
Alignment:
Q  588 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 686  Q
    |||||||  ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| ||||||||||   ||||||||||||||| ||||||||    
T  16242928 ataaatagtagttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaa 16243027  T
Q  687 tgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||||||| ||||||||||| || |||||||||||||||    
T  16243028 tgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 636 - 759
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 735  Q
    |||||||| |||| || ||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| ||| || ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  736 ttacctttcctttaagttcctgca 759  Q
    |||  ||| ||||||||| |||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 13409876 - 13409834
Alignment:
Q  711 acctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  13409876 acctttatttttaatgcaatgcattttacctttcctttaagtt 13409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 759
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  685 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 759  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 759
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  685 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 759  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 588 - 819
Target Start/End: Original strand, 22397545 - 22397777
Alignment:
Q  588 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataaaga 685  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||| ||| |||||||    
T  22397545 ataaataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaaga 22397644  T
Q  686 atgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcc-tttaagttcctgcaatttaaacttaatgccttaactttg 784  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    |||||     
T  22397645 atgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agactttt 22397742  T
Q  785 cttttaaaaccttttttctgtcgaaagacgccaca 819  Q
    ||||||||||||||||| |||||||||||||||||    
T  22397743 cttttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 530 - 728
Target Start/End: Complemental strand, 16177502 - 16177304
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  ||| | ||| ||||||||||  ||||||||||| | |||||||||||||||| ||    
T  16177502 tctacatggaaggagtgctgattgtgggattagtttctttccac-ttattttctatgtataaatattagttttccatatggaaaacgggtcgcaaataac 16177404  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    |||||||||||||||||||| ||||||||||      |||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||    
T  16177403 ctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaaccacatttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 610 - 810
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  610 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 709  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||| | || | ||||||||||||| ||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  710 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 807  Q
     |||||||||||||||||||| || ||||  ||| ||||||||| || ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  808 aaa 810  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 532 - 728
Target Start/End: Original strand, 1177150 - 1177349
Alignment:
Q  532 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaacgggtcgcaaatcaccta 631  Q
    |||||||| |||||||||||  || |||| |||||||| ||  ||| |  || ||||||||||  |||||| ||||| ||||| || ||||||||| |||    
T  1177150 tacatggagggagtgttgatcatgagattagtttcttttcat-ttatttcctatgtataaatagtagttttgcataggaaaacaggacgcaaatcatcta 1177248  T
Q  632 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga----atgtatgtaaaggatttgtcgaactacctttatttttaatgc 727  Q
    |||| |||||||||||| |||||||||  | ||||||||||||||| |||||||    |||||||||||||||||||||||| |||||||||||||||||    
T  1177249 tacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgc 1177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 530 - 724
Target Start/End: Complemental strand, 15830220 - 15830026
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 628  Q
    ||||||||||| ||||| | ||| ||||||| |||||||||||  ||| | ||| ||||||||||| |||||| |||| | ||||||||||||||||| |    
T  15830220 tctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataaggaaaacgggtcgcaaatcgc 15830122  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 724  Q
    ||||||| |||||||||||| || ||||| | | | ||||||||||||| ||||| |||||||||||| |||||||||||  || |||||||||||    
T  15830121 ctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatcacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 588 - 753
Target Start/End: Original strand, 17947842 - 17948007
Alignment:
Q  588 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 686  Q
    |||||||  ||||||||||||  |||| |||||  ||||||| |||| ||| ||||| ||||||||||||| ||| || |||| ||||||| ||| | ||    
T  17947842 ataaatattagttttccatagggaaaatgggtcaaaaatcacttatagaaa-ttctacaacattcgaagtaacggcgcaagaggaaagagttatataaaa 17947940  T
Q  687 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    ||||||||||||||||||||||| ||||||||||||||| || || | |||| ||||||||||||||    
T  17947941 tgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatttatctttcctttaagtt 17948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 616 - 769
Target Start/End: Original strand, 14762938 - 14763090
Alignment:
Q  616 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 715  Q
    ||||||||||||| |||| ||| ||||| | || ||||||||| |   |||||||||||||| ||| ||||||||||||||||| || |||||| |||||    
T  14762938 ggtcgcaaatcacttatagaaa-ttctacatcactcgaagtactgacacgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctt 14763036  T
Q  716 tatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||| ||| |||||    
T  14763037 tatttttaatgcaatgcaatttatcttttctttaagtttctgcacttttaactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 636 - 769
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 735  Q
    |||||||| |||| || ||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  736 ttacctttcctttaagttcctgcaatttaaactt 769  Q
    ||| | || ||||||||| ||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 530 - 779
Target Start/End: Original strand, 31126082 - 31126351
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    ||||||||||||||||| | ||  ||||||| |||||||||||  ||| |  || ||||||||||| |||||||| |||  |||||||||| |||||| |    
T  31126082 tctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaaaacgggtctcaaatctc 31126180  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa------------agaatgtatgtaaaggatttgtcgaactaccttt 716  Q
    |||||   |||||||||||| |||||||| |   || |||||||||||| ||||            | ||||||||||||||||||| ||||| ||||||    
T  31126181 ctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaaggatttgccgaaccaccttt 31126280  T
Q  717 atttttaatgca-------ttgtattttacctttcctttaagttcctgcaattt-aaacttaatgccttaa 779  Q
    |||| |||||||       |||||||||  |||| |||| |||| ||||||||| ||||||||||| ||||    
T  31126281 atttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 17365558 - 17365599
Alignment:
Q  60 taacttggaccaaatttggtttacacaattacccaaaaactt 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  17365558 taacttggaccaagtttggtttacacaattacccaaaaactt 17365599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 25945889 - 25945847
Alignment:
Q  711 acctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||||||||||||||||| || ||||||||| |||||||||||    
T  25945889 acctttatttttaatgcaatgcattttacctctcctttaagtt 25945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 767
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  666 agagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattta 764  Q
    |||||||||||| ||| | |||||||||||   |||||||||||| |||||||   |||||||| |||| ||||||||| ||||||||| ||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  765 aac 767  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 17365687 - 17365764
Alignment:
Q  207 tatatgtttccttattttgagatacctcttttattgatcttgcagctgtgccttgacaaacgactcagactagtacac 284  Q
    ||||| |||||||||||||| | || ||||| |||||  | |||| | ||||| ||||||| ||||||||||||||||    
T  17365687 tatatatttccttattttgacacacttctttcattgacttcgcagttatgcctcgacaaacaactcagactagtacac 17365764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 4e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 548 - 819
Target Start/End: Complemental strand, 11361866 - 11361595
Alignment:
Q  548 tgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa 646  Q
    |||| |||||||| ||||||||||| |  | | ||| |||||||||||||||||||| |||  ||||| ||||| | |||||||||||| ||||||||||    
T  11361866 tgatcgtgggattagtttctttccatgc-attttctatgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaa 11361768  T
Q  647 cattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcct 746  Q
    || ||||  |||||  ||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  11361767 cactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcat 11361668  T
Q  747 ttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 819  Q
    |||| || ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |||||    
T  11361667 ttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 530 - 812
Target Start/End: Original strand, 9409083 - 9409370
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattc---gtttctttccaagttagtatctt-tgtataaataagagttttccatagaa-aaacgggtcgcaaa 624  Q
    |||||||||||| ||||||||| ||||||||    |||| |||||| |||| | || | ||||||||||  ||||||||||||   ||||||||||||||    
T  9409083 tctacatggaagaagtgttgatcgtgggattatttgtttttttcca-gttattttcctatgtataaatagtagttttccataggggaaacgggtcgcaaa 9409181  T
Q  625 tcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 724  Q
    |||| |||| | |||||||||||| |||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9409182 tcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 9409281  T
Q  725 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaaaga 812  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| ||||    
T  9409282 tgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgtaaga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 587 - 769
Target Start/End: Complemental strand, 16675269 - 16675086
Alignment:
Q  587 tataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga 685  Q
    ||||||||  ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| |||||||||||| ||||||||| ||||| ||| |||    
T  16675269 tataaatagtagttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacaga 16675171  T
Q  686 atgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    |||||||| ||| |||||||||||| || |||||||| |||||| |  | ||||||||| ||||| ||| ||||| |||||||||    
T  16675170 atgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 666 - 728
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  666 agagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    |||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 8140930 - 8140832
Alignment:
Q  588 ataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 686  Q
    |||||||  ||||||||||| | ||||  |||| |||||||| |||| |||||||||||||| | |||||||||| ||||||| ||||||| ||| ||||    
T  8140930 ataaatagtagttttccatatggaaaattggtcacaaatcacttata-aaaattctaaaacacttgaagtaccggcgcgagagtaaagagttatatagaa 8140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 585 - 753
Target Start/End: Complemental strand, 4697638 - 4697470
Alignment:
Q  585 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| || ||| ||||| | ||||||| | ||| ||| |    
T  4697638 tgtataaatagtagttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttataca 4697540  T
Q  684 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
     |||||||||||   |||| ||||||| |||||||  ||||||||| |  | ||||||||| |||||||||    
T  4697539 aaatgtatgtaatctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtt 4697470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 18558473 - 18558515
Alignment:
Q  711 acctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  18558473 acctttatttttaatgcaatgcattttacatttcctttaagtt 18558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 530 - 774
Target Start/End: Complemental strand, 20146420 - 20146169
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 628  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  20146420 tctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaaaatgggtcgcaaatcac 20146321  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||||||||||||| | | || | ||||||||||||||||    
T  20146320 ctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggaccatctttatttttaatgca 20146222  T
Q  729 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgc 774  Q
           || |||||| ||||| ||||||||| ||||||||||||||||||||    
T  20146221 cttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 585 - 793
Target Start/End: Original strand, 11013817 - 11014027
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    |||||| ||| |||||||||||||  |||| |||| ||||||||||||||||||||| ||||||| ||||| |||| |   ||||||||||||| |||||    
T  11013817 tgtatatataggagttttccataggtaaaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaa 11013916  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactt 782  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||  ||||||||||||| | | || ||||||||||||||||| ||||    
T  11013917 gaatatatgtaaaggatttgtcgagccacctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactt 11014016  T
Q  783 tgcttttaaaa 793  Q
    |||||||||||    
T  11014017 tgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 585 - 763
Target Start/End: Complemental strand, 33103201 - 33103021
Alignment:
Q  585 tgtataaataagagttttccataga--aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 682  Q
    ||||||||||  ||||||||||||   ||||| |||||||||||||||||||| |||||||||||| |||||||||||  | ||||||||||||| |||     
T  33103201 tgtataaatagtagttttccataggggaaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatat 33103102  T
Q  683 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 763  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  33103101 agaatgtatgtaaaggatttgtcgaactacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 597 - 769
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  597 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 695  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| |||||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  696 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    |||||||||||||| |||||||||||||||||| || | || | |||| ||||||||| ||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 599 - 769
Target Start/End: Original strand, 22607834 - 22608003
Alignment:
Q  599 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 697  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| |||||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  698 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    ||| ||  |||| |||||||||||||||||| |||| |||| ||||||||||| || ||||||||| |||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttcctttaaatt-ctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 585 - 750
Target Start/End: Original strand, 20150422 - 20150588
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||   |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| |||||||||||  ||||||||||| ||| ||| |    
T  20150422 tgtataaatagttgttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcataca 20150521  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaa 750  Q
     |||| ||| |||||||||||| ||| ||||||||||||||| || | || |||| |||| ||||||    
T  20150522 aaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataatttatcttttctttaa 20150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 585 - 725
Target Start/End: Original strand, 13202052 - 13202192
Alignment:
Q  585 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  |||||| ||||| ||||||  |||||||||||| |||| ||| ||||| |||| ||||| |||||| ||||||||||| ||| ||| |    
T  13202052 tgtataaatagtagtttttcataggaaaaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttataca 13202150  T
Q  684 gaatgtatgtaaaggatttgtcgaactacctttatttttaat 725  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  13202151 taatgtatgtaaaggatttgtcgaaccacctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 588 - 753
Target Start/End: Complemental strand, 17615439 - 17615274
Alignment:
Q  588 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 686  Q
    |||||||  ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| ||||||||| || | |||| |||||||| | | | ||    
T  17615439 ataaatagtagttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataa 17615341  T
Q  687 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 753  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||||||    
T  17615340 tgtatgtaaaggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtt 17615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 20839758 - 20839813
Alignment:
Q  57 gagtaacttggaccaaatttggtttacacaattacccaaaaactttacattatgga 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20839758 gagtaacttggaccaaatttggtttacataattacccaaaaactttacattatgga 20839813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 636 - 726
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 726  Q
    |||||||| |||| |||||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||| ||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 648
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  585 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 648  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 769
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  697 ggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    ||||||||||||| ||||||||||||||||||    | |||| |||| ||||||||| ||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 530 - 774
Target Start/End: Original strand, 5599 - 5851
Alignment:
Q  530 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 628  Q
    |||| ||||||||||||||||| |||||||| ||||| |||||||||| |  |||||||||||||||||||||| ||||  ||||||||||| |||||||    
T  5599 tctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaaaacgggtcgtaaatcac 5698  T
Q  629 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 728  Q
    ||||||| |||||||||||  | |||||||||   ||||| |||||||| |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  5699 ctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggaccacctttatttttaatgca 5798  T
Q  729 -ttg------tattttacctttcctttaagttcctgcaatttaaacttaatgc 774  Q
     |||      |||||| ||||| |||||||||  |||||||||||||||||||    
T  5799 cttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 533 - 819
Target Start/End: Complemental strand, 21077 - 20793
Alignment:
Q  533 acatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaa-aacgggtcgcaaatcaccta 631  Q
    ||||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||  ||| ||||||||  | || |||||||||||||| ||    
T  21077 acatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggacaatgggtcgcaaatcacgta 20979  T
Q  632 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 731  Q
    || | |||||||||||| | |||||||     |||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||    
T  20978 ta-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacctttattttaaatgcattg 20880  T
Q  732 tattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 819  Q
     |||||  |||||||||||||| ||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||||||||||    
T  20879 cattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaagacgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 537 - 697
Target Start/End: Complemental strand, 13151 - 12991
Alignment:
Q  537 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 635  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  13151 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 13053  T
Q  636 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 697  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  13052 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 597 - 769
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  597 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 695  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| |||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  696 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
    |||||||||||||| |||||||||||||| ||| || | |||| | || ||||||||| ||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 769
Target Start/End: Complemental strand, 4703 - 4546
Alignment:
Q  610 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 709  Q
    |||||||||| |||||||| |||| ||| ||||| |||| | || ||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||    
T  4703 aaaacgggtcacaaatcacttatagaaa-ttctacaacacttga-gtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaac 4606  T
Q  710 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 769  Q
     |||||||||||||| ||| || | ||||   || ||||||||| ||||| ||| |||||    
T  4605 cacctttatttttaaagcaatgcaatttattatttctttaagtttctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 585 - 749
Target Start/End: Original strand, 374113 - 374275
Alignment:
Q  585 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 684  Q
    ||||||||||  ||||||||||||  |||  ||||||||||||| |||| ||| | ||| |||| || |||||| || ||||||||||||||| ||| |     
T  374113 tgtataaatagtagttttccatagggaaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaa 374210  T
Q  685 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttccttta 749  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| || | |||| ||||||||||    
T  374211 aatgtatgtaaagtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttccttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 585 - 738
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  585 tgtataaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  684 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtatttta 738  Q
     ||||||||| |||  ||||||| ||| ||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 721
Target Start/End: Original strand, 859 - 996
Alignment:
Q  585 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 683  Q
    ||||||||||  ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| |||||||||||| |||||| | |||||| ||| |    
T  859 tgtataaatagtagttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttataca 957  T
Q  684 gaatgtatgt-aaaggatttgtcgaactacctttatttt 721  Q
     ||||||||| ||| ||||||| |||| |||||||||||    
T  958 taatgtatgtaaaatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 577
Target Start/End: Original strand, 5989 - 6035
Alignment:
Q  531 ctacatggaaggagtgttgattgtgggattcgtttctttccaagtta 577  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  5989 ctacatggaacgagtgctgatcgtgggattagtttctttccaagtta 6035  T

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