View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14162_low_9 (Length: 516)
Name: NF14162_low_9
Description: NF14162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14162_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 40 - 497
Target Start/End: Original strand, 32392476 - 32392933
Alignment:
| Q |
40 |
aaacaagtttatgaatgtggacccaaatccaaccaatgatattgtatttactagtaaaattagtactataacatatcatgtgtttcatgaaaagaaatct |
139 |
Q |
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| T |
32392476 |
aaacaagtttatgaatgtggacccaaatccaacatatgatattgtatttacttgtaaaattagtactataacatatcatgtgtttcatgaaaagaagtct |
32392575 |
T |
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| Q |
140 |
atgcatgtggacgcaaatccaaccaagtgaacctgtatcaannnnnnnctaagtaatataaatggatggtaacataagaaatgctaatgtaaccaactcc |
239 |
Q |
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| T |
32392576 |
atgcatgtggacgcaaatccaaccaaatgaacctgtatcaatttttttccaagtaatataaatggatggtaacataagaaatgctaatgtaaccaactcc |
32392675 |
T |
|
| Q |
240 |
acctttccttctcaaactctccaccataatttcaccaccgtctgccggaatgtcaccgtctaccggagtccatatccctctattgaccggatcaaaattg |
339 |
Q |
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| T |
32392676 |
acctttccttctcaaactctccaccataatttcaccaccgtctgccggaatgtcaccgtctaccggagtccacatccctctattgaccggatcaaaattg |
32392775 |
T |
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| Q |
340 |
gcgccggcgccaggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttctggaatcatgtccattccggcaattctaaaagttcttg |
439 |
Q |
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| T |
32392776 |
gcgccggcgcccggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttctggaatcatgtccattccggcaattctaaaagttcttg |
32392875 |
T |
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| Q |
440 |
gagtgtttcccgcccttgccttaattctaatcgtggctgtgcttgctgaagtttcagt |
497 |
Q |
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| T |
32392876 |
gagtgtttcccgcccttgccttaattctaatcgtggctgtgcttgctgaagtttcagt |
32392933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 501
Target Start/End: Original strand, 32394788 - 32394996
Alignment:
| Q |
293 |
caccgtctaccggagtccatatccctctattgaccggatcaaaattggcgccggcgccaggtaccatccccggcgccgtgctcaatgtcgccacaagcat |
392 |
Q |
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|||||||| |||||||||| | ||||| |||||||||||||| |||| ||| || ||| | |||||||| ||||| ||||||||||||| ||||| |
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| T |
32394788 |
caccgtctgccggagtccacgttcctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcat |
32394887 |
T |
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| Q |
393 |
tattggttctggaatcatgtccattccggcaattctaaaagttcttggagtgtttcccgcccttgccttaattctaatcgtggctgtgcttgctgaagtt |
492 |
Q |
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| T |
32394888 |
aattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtt |
32394987 |
T |
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| Q |
493 |
tcagttgat |
501 |
Q |
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|| |||||| |
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| T |
32394988 |
tctgttgat |
32394996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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